BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482510
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35500.1 | Symbols: SKL2 | shikimate kinase like 2 | chr2:14... 1879 0.0
> AT2G35500.1 | Symbols: SKL2 | shikimate kinase like 2 | chr2:14914003-14916135
FORWARD LENGTH=1425
Length=1425
Score = 1879 bits (1017), Expect = 0.0
Identities = 1152/1217 (95%), Gaps = 9/1217 (1%)
Strand=Plus/Plus
Query 1 ATCATCCATGGCTGCTTTTGCTTCTGGTTTGGCTTCTACAATCTTCTACTCTCCTTCCCT 60
|||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||| ||
Sbjct 29 ATCATCAATGGCTGCTTTTGCTTCTGGTTTGG---CTATAATCTTCAACTCTCCTTCACT 85
Query 61 AAACCCTCTCACCTGTCAAGCAACTCTT-TTTTCTCCGATTCGGATTCGTTCCTCGCCTC 119
||||||| |||| |||||| || ||| ||||| ||| ||||||||||||||| ||||
Sbjct 86 AAACCCTGTCACAACTCAAGCGAC-CTTCCTTTCTTCGAATCGGATTCGTTCCTCTCCTC 144
Query 120 GCGTTTTCAGGGGATTACATAGCCTCCGACGCCGCGGCTTTCGGCGATTCTCTCAGAATG 179
|||||||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||||
Sbjct 145 GCGTTTTCAGTGGATTTCACAGCCTCCGACGTCGCGGCTTCCGGCGATTCTCTCAAAATG 204
Query 180 TTA-CCGCCGATCGGTTCAATAGCTTCTCGTGTAACTGCTTATCCGCCGTATCCACCAGC 238
||| || |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 205 TTATCC-CCGACCGGTTTAATAGCTTCTCATGTAATTGCTTATCCGCCGTATCCACCAGC 263
Query 239 ACTATCGATTACGAGTTCACGGATGGTGGCAAAGAGGTGGAATTAAGATTGAGGTTGAAG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 264 ACTATCGATTACGAGTTCACGGATGGTGGCAAAGAGGTGGAATTAAGATTGAGGTTAAAG 323
Query 299 ACAGGTGACACACTTTCTCCAAAGGATATATCTGTTGATGCAGATGGAACATCGTTAGCC 358
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 324 ACAGGTGAGATACTTTCTCCAAAGGATATATCTGTTGACGCAGATGGAACATCGTTAGCC 383
Query 359 GTTAAAGAAAAGCGTAATGGATTGCTGATTACACTTCTAGAGACTAACCAGT-TATTTGA 417
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 384 GTTAAAGAAAAGCGGAATGGATTGCTGATTACACTTCTAGAGACTAACCA-TCTCTTTGA 442
Query 418 GAAGATTATGCCCTCTGAAACAATATGGTACATAGACGAAGATCAGTTGGTTGTCAACAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 443 GAAGATTATGCCCTCTGAAACAATATGGTACATAGACGAAGATCAGTTGGTTGTGAATAT 502
Query 478 GAAGAAGGTGGATGGGGAATTGAAGTGGCCTGATATTGTTGAGTCCTGGGAATCTTTGAC 537
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 503 GAAGAAGGTGGATGGGGAATTGAAGTGGCCTGATATTGTCGAGTCCTGGGAGTCTTTGAC 562
Query 538 TGCGGGAATGTTGCAACTTCTTAAAGGTGCATCAATCTACATTGTGGGAGATTCAACTGA 597
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 TGCAGGAATGATGCAACTTCTTAAAGGTGCATCAATCTACATTGTTGGAGATTCAACTGA 622
Query 598 AATCAACCAAAAAGTGTCTCGGGAGCTAGCCGTTGGCCTTGGGTACAGTCCTTTAGATTC 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 623 AATCAACCAAAAAGTGTCTCGAGAGCTAGCCGTTGGCCTTGGGTACAGTCCTTTAGATTC 682
Query 658 AAAGGAATTGCTGGAAAGCTTTTCCAAGCAAACAATCGATTCTTGGATTCTTGCAGAAGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AAAGGAATTGCTGGAAAGCTTTTCCAAGCAAACAATCGATTCTTGGATTCTTGCAGAAGG 742
Query 718 GCCGGATTCTGTAGCTGAAGCAGAGAGTTCGGTGTTGGAAAGCTTGAGCAGCCATGTGCG 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 743 GCCGGATTCTGTAGCTGAAGCAGAGAGTTCGGTATTGGAAAGCTTGAGCAGCCATGTGCG 802
Query 778 TACTGTTGTCTCAACTTTGGGAGGTAAACATGGAGCTGCAGGGAGAGCCGATCAGTGGAG 837
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 803 TACTGTTGTCTCAACTTTGGGAGGTAAACATGGAGCTGCGGGGAGAGCTGATCAGTGGAG 862
Query 838 ACATCTTTACTCCGGATTTACCGTTTGGGTATCACAGACTGAAGCGACAGATGAAGAATC 897
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 863 ACATCTTTACTCCGGATTTACCGTTTGGGTATCACAGACTGAAGCCACAGATGAAGAGTC 922
Query 898 AGCTAAAGAAGAAGCGAGGCGAAACAAGCAAGAGAGGGAGATTGGGTATTCAAACGCAGA 957
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 923 AGCTAAAGAAGAAGCGAGGAGAAGTAAGCAAGAGAGGGAGATTGGGTATTCAAACGCCGA 982
Query 958 CGTGGTGGTGAAGCTCCAAGGTTGGGACCCGACGCATGCTAAGAGCGTGGCTCAGGCTTC 1017
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 983 CGTTGTGGTGAAGCTCCAAGGTTGGGACCCGACGCATGCAAAGAGCGTGGCTCAGGCTTC 1042
Query 1018 ATTGAGTGCACTTAAGCAACTGATCATCTCAGACAAGGGACTTCCAGGTAAGAAGAGTTT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CTTGAGTGCACTTAAGCAACTGATCATCTCAGACAAGGGACTTCCAGGTAAGAAGAGTTT 1102
Query 1078 GTACATACGCTTGGGATGCCGTGGCGATTGGCCCAATATCAAACCGCCGGGATGGGATCC 1137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1103 GTACATACGCTTGGGATGCCGTGGCGATTGGCCCAATATAAAACCGCCGGGATGGGATCC 1162
Query 1138 GTCGTCTGACACCGGAGCTCATCCACAATTCACATAAACAGTTTCAAGACATGCTTTTTG 1197
||||||||||| ||| |||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1163 ATCGTCTGACACTGGACCTCATCCACAGTTTACATAAACAGTGTCAAGACATGCTTTTTG 1222
Query 1198 CTCTCTCCTACAAACGA 1214
|||||||||||||||||
Sbjct 1223 CTCTCTCCTACAAACGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5