BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482511
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 | chr2:14916... 3024 0.0
> AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 | chr2:14916723-14920377
REVERSE LENGTH=2299
Length=2299
Score = 3024 bits (1637), Expect = 0.0
Identities = 1899/2023 (94%), Gaps = 28/2023 (1%)
Strand=Plus/Plus
Query 254 GTGCTACAGCCGGtttttttCGATGCTGTTGGTGAGCTCCCATCCTTAGGACTGCTAGAG 313
||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 295 GTGCTACAGCCTGTTTTTTTCGAAGCTGTTGGTGAGTTCCCATCCTTAGTACTGCTAGAC 354
Query 314 AGTTCGGTGTTTTAGTTGACTTTATATTCAAGGTTATAGGTTTAGCGTTGTTAGTAGATA 373
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 355 AGTTCGGTGTGTTAGTTGACTTTATATTCAAGGTTATAGGTTTAGTGTTGTTAGTAGAGA 414
Query 374 GAAATGGAAGCCAAAATCGTCAAGGTATCGGATAGTAGTTATAAAGAT-GTACTTGGGAA 432
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 415 AAAATGGAAGCCAAAATCGTCAAGGTATCGGATAGTAGTTATAAAGATGGT-CTTGGGAA 473
Query 433 GAAGAGAAAGCATCCCGGGAACTATATTCCATATGATTCTGGAAGGTCATATGCAAAGCT 492
||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 474 GAAGAGAAAGCATCCAGGGAACTATACTCCTTATGATTCTGGAAGGTCATATGCAAAGCT 533
Query 493 TCAATGTGTGCTCTCACCGAACAGTTCCACCCAAAAGCTTGAGAAAAAGAGAAATTTGGA 552
||||| ||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 534 GCAATGGGTGCTTTCACCCAACAGTTCCACCCAGAAGCTTGAGAAAAGGAGAAATTTGGA 593
Query 553 TGGTGAAAACAAAGCTAATGTTTCTGAGAATCGTGTTGGGAAGTCTCTGGTCAGATACTT 612
|||||||||||||| || |||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 594 TGGTGAAAACAAAGTTATTGTTTCTGAGAATCATGTTGAGAAGTCTTTGGTCAGATACTT 653
Query 613 CTCCTATTATAAGAAGACAGGAGTGCCAAAGCGTGTAATGTTCCATGAGAATGGTGAATG 672
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 CTCTTATTATAAGAAGACAGGAGTGCCAAAACGTGTAATGTTCCATGAGAATGGTGAATG 713
Query 673 GATTGATTTGCCTGAGCATATTCTTTGCGACATCAGGAATGATCTTGAAGCAAAGAGAGC 732
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 GATTGATTTGCCTGATCATATTCTATGCGACATCAGGAATGATCTTGAAGCAAAGAGAGC 773
Query 733 TGCAATTGAGTTCAATTGGTGTGGTCGCCCTTTTCTCCTGGATTTCTTGCACATGTATCG 792
| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 774 TACAATTGAGTTCAATTGGTGCGGTCGCCATTTTCTCCTGGATTTCTTGCACATGTATCG 833
Query 793 ACTAGACTTGGAAACAGGTGTAAAAACCCAGCTTGCTTGGATTGATATTGCTGGCAAATG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACTAGACTTGGAAACAGGTGTAAAAACCCAGCTTGCTTGGATTGATATTGCTGGCAAATG 893
Query 853 CTTTTTCCCCGAAACTTTTGACAGCCTCGAAAGGGACTGCTGCCATCATATCTGTGGGGA 912
||||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 894 CTTTTTCCCTGAAACTTTTGACACCCTCGAAAGGGACGGCTGCCATCATATCCGTGGGGA 953
Query 913 AGATCCAGAACAACATGATCAACGTGAGATCAAGCTGCACATTGAAATTGATGTAAATGG 972
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 954 AGATCCGGAACAACATGATCAACGTGAGATCAAGCTGCACATTGAAATTGATGTAAATAG 1013
Query 973 TGGGGAGTTACCGAGGCTGAATTTGAATGTGGTCAGTGACGAGTCTGGTGACAATATGGA 1032
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1014 TGGGGAGTTACCGAGGCTGAATTTGAATGTGGTCACTGACGAGTCTGGTGACAATATGGA 1073
Query 1033 TGATATTCAAGCTGTTCAGAGATCCTCAAATGGGCAAAATGACGAGGCATCAGAGGATAG 1092
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1074 TGATTTTCAAGCTGTTCAGAGATCCTCAAATGGGCCAAATGACGAGGCATCAGAGGATAG 1133
Query 1093 CTGCAGCCGTGAGCTTGATGATGCTGTTAAGAAATGGGACAAAACAGAAATTGATCAGTT 1152
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1134 CTGCAGCCGTGAGCTTGATGATGCTGTTGAGAAATGGGACAAAACAGAAACTGATCGGTT 1193
Query 1153 CTCTGGTGTCAAGCCTGCTGAGGAGGAGCTTGATAAAAATGTTGTCAAACAAATGTTTGC 1212
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1194 CTCTGGTGTCAAGCCTGCTGAGGAGGAGCTTGATAAAGATGCTGTCAAACAAATGTTTGC 1253
Query 1213 TTTGGGTACTGCCACTCTAGGGCATGTAGAGTTGCTTGATGTGTATCAGTTTTCAAGCGA 1272
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1254 TTTGGGTGCTGCCACTCTAGGGCATGTAGAGTCGCTTGATGTGTATCAGTTTTCAAGCGA 1313
Query 1273 GACTGCCAAAG-CTCGTCTATCACTTTTCCAGAAGCAAGCTGACATCACTAAGAAACGCC 1331
|| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1314 GATTGC-AAAGGCTCGTCTATCTCTTTTCCAGAAGCAAGCTGACATCACTAAGAAACACC 1372
Query 1332 GAGGAGATGCGAACATTAGATATGCATGGGTTCCTGCGAAGAAGGAAGTGTTATCTGCCG 1391
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGGAGATGCAAACATTAGATATGCATGGGTTCCTGCGAAGAAGGAAGTGTTATCTGCCG 1432
Query 1392 TTATGATGCATGGACTTGGAGTGGGTGGAGCTTTCGTTAAAAAGTCTATGTATGGTGTTG 1451
| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1433 TGATGATGCATGGACTTGGAGTGGGTGGAGCATTCATTAAAAAGTCTATGTATGGTGTTG 1492
Query 1452 GGGTTCACTTAAATGCTGCAAACTGCTCTTATTTCAGTGCTAGATACTGTGATATTGACG 1511
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1493 GGGTTCAC------GCTGCAAACTGCCCTTATTTCAGTGCTAGATACTGTGATATTGACG 1546
Query 1512 ATAATGGTGTGCGGCACATGGTTTTGTGCCGTGTAATAATGGGGAATATGGAGCCTCTTC 1571
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1547 ATAATGGTGTGCGGCACATGGTTTTGTGCCGCGTAATAATGGGGAATATGGAGCCTCTTC 1606
Query 1572 GTGGTGATAACACGCAGTTCTTTAGTGGTGGAGAGGAGTATGATAATGGAGTTGATGATG 1631
|||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1607 GTGGTGATAACACGCAGTACTTTACTGGTGGAGAAGAGTATGATAATGGGGTTGATGATG 1666
Query 1632 TTGAGAGTCCGAAGCATTATCTTATCTGGAACATGAATATGAACACTCACATTTACCCAG 1691
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 TTGAGAGTCCAAAGCATTACCTTATCTGGAACATGAATATGAACACTCACATTTACCCAG 1726
Query 1692 AATTTGTAGTTAGCTTCAAGCTGTCTATCCCCAATGCTGAAGTGAATACTCTTCCTACTA 1751
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1727 AATTTGTAGTTAGCTTCAAGCTGTCTATCCCCAATGCTGAAGGGAATATTCTTCCTACTA 1786
Query 1752 CTCAGAGTAAGCACGAGACTTTGG-AGCTCACCTTGGAAGGACCCAAAGGTTCTCCCTCA 1810
||||||||| |||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 1787 CTCAGAGTAGGCACGAGAGTTCGGGA-CTCACCTTGGAAGGACCCAAAGGTTCTCCCTCA 1845
Query 1811 AATGATCCAGGAAGAGTATCAAATGGAGGAGGTTCAGGGAGCCAAAAGACTAGAGGCAGT 1870
||||| |||||||| |||||||||||||| |||||||||| |||||| ||| | |
Sbjct 1846 AATGAGCCAGGAAGGGTATCAAATGGAGG---TTCAGGGAGCGAAAAGAATAG---C--T 1897
Query 1871 TCCAGCAGTAGACGGCCCAGATCTCCTATGATGCCTTTCCCTTTGCTGTTCAAAGCAATC 1930
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1898 -CCAGCAGTAGAAGGCCCAGATCTCCTATAATGCCTTTCCCTCTGCTGTTCAAAGCAATC 1956
Query 1931 TCAACCAAAATTGCCCGGAAAGACATGGATTTGATT-TCTGCTGGTTACCAGGAACTCAG 1989
|| | ||||||||| || ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1957 TCGAGCAAAATTGCTCGTAAAGACATGGATTTGATAAT-TGCTGGTTACCAGGAACTCAG 2015
Query 1990 GGAGAAGAAGGTGTCGAGAAAGGAATTTTACAAGACGCTGAGGGTGATTGTAGGAGATGA 2049
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2016 GGAGAAGAAGGTGTCGAGAAAGGAATTTTATAAGACGCTGAGTATGATTGTAGGAGATGA 2075
Query 2050 TGATCTGCTGAAATCCACCATAACAAGCCTTCAAAGGAGTTTGGGTTAGAGTAATGTGTC 2109
||||||||||| ||| || |||||| |||||||||||||||||||||||| |||||||||
Sbjct 2076 TGATCTGCTGATATCTACAATAACAGGCCTTCAAAGGAGTTTGGGTTAGATTAATGTGTC 2135
Query 2110 GACTTCTCTTTGCTGTCGTGAAACCTTAATAATTTAGATTACGACAAACCTGACTTGGTC 2169
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||
Sbjct 2136 GACTTCTCTTTGCTGTCGTGAAACCTTAATAGTTTGGATTACGACAAACGTGACTTGATC 2195
Query 2170 TTTAGGAACTTAGTAGTA-T--TGTTATATTTACTCTT--GGTGAAACTAGTCTTCATTG 2224
||||| |||||||||||| | |||||||||||||||| |||||||||||||| ||||
Sbjct 2196 TTTAGAAACTTAGTAGTAGTACTGTTATATTTACTCTTTTGGTGAAACTAGTCTCCATTA 2255
Query 2225 TCCTGTTTTTCCTTATTTGGAATCAAAGAGTCTTTTATTCATC 2267
||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 2256 TCCTGTTTTTCTTTACTTGGAATCAAAGAGTCTTTTATTGATC 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5