BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482512
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35530.1 | Symbols: bZIP16, AtbZIP16 | basic region/leucine ... 1360 0.0
> AT2G35530.1 | Symbols: bZIP16, AtbZIP16 | basic region/leucine
zipper transcription factor 16 | chr2:14922962-14926591 REVERSE
LENGTH=1729
Length=1729
Score = 1360 bits (736), Expect = 0.0
Identities = 886/954 (93%), Gaps = 27/954 (3%)
Strand=Plus/Plus
Query 766 TGAAGGAAGTGATGGAAACTCTCAAAATGACTCGGGATCTGGACTGGACGGAAAGGATGC 825
||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||
Sbjct 751 TGAAGGAAGTGATGGGAACTCTCAAAATGATTCGGGATCTGGACTAGATGGAAAGGATGC 810
Query 826 TGAAGCAGCATCAGAGAATGGTGGTTCTGCCAATGGTCCACGAAATGGAAGTGCTGGTAC 885
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 811 TGAAGCAGCATCAGAGAATGGTGGTTCTGCCAATGGTCCGCAAAATGGAAGTGCTGGTAC 870
Query 886 ACCTATTCTACCGGTGAGCCAGACCGTACCAATCATGCCAATGACAGCTGCAGGTGTTCC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 ACCTATTCTACCGGTGAGCCAGACCGTACCAATCATGCCAATGACAGCTGCAGGTGTTCC 930
Query 946 CGGCCCACCAACAAATTTAAATATTGGGATGGATTACTGGGGTGCTCCTACTTCAGCTGC 1005
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 931 TGGCCCACCAACAAATTTAAATATTGGGATGGATTACTGGGGTGCTCCAACTTCAGCTGG 990
Query 1006 TATCCCTGGAATGCATGGGAAAGTATCTACACCAGTTCCTGGAGTTGTTGCTCCAGGGTC 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 991 TATCCCTGGAATGCATGGGAAAGTATCTACACCAGTTCCTGGAGTTGTTGCTCCAGGCTC 1050
Query 1066 GCGAGATGGTGGCCATTCACAACCCTGGTTACAGGACGATAGAGAACTTAAGCGACAGAG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GCGAGATGGTGGCCATTCACAACCCTGGTTACAGGACGATAGAGAACTTAAGCGACAGAG 1110
Query 1126 ACGGAAGCAGTCCAATAGGGAGTCTGCTCGAAGATCCAGGTTGCGTAAACAGGCCGAATG 1185
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1111 ACGGAAGCAGTCCAATAGGGAGTCTGCTCGAAGATCAAGGTTGCGTAAACAGGCCGAATG 1170
Query 1186 TGATGAGCTGGCCCAACGCGCTGAGGTGTTAAACGAAGAAAACACAAATCTCAGAGCAGA 1245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1171 TGATGAGCTGGCCCAACGCGCTGAGGTGTTGAACGAAGAAAACACAAATCTCAGAGCAGA 1230
Query 1246 AATCAACAAGCTCAAAAGCCAATGCGAAGAGCTCACCGCCGAGAACACCTCTCTCAAGGA 1305
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1231 AATCAACAAGCTCAAAAGCCAATGCGAAGAGCTTACCACCGAGAACACCTCTCTCAAGGA 1290
Query 1306 CCAACTTTCATTATTCCCTCCACTTGAAGGCATAAGCATGGACAATGACCACCAAGAACC 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CCAACTTTCATTATTCCCTCCACTTGAAGGCATAAGCATGGACAATGACCACCAAGAACC 1350
Query 1366 AGACACCAATCAAACAGGCGCTGCAGAGAGAAAGGTTGATTCCTACAAAGACACAACGTG 1425
|||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||
Sbjct 1351 AGACACCAATCAAACAGGTGCCGCAGAGAGAAAGGTTGATTCATACAAAGACTCAACGTG 1410
Query 1426 AGGGGACATAGAGCAAAACCAATTCCTAACACAGGTATaaaaaaaTGTAGCAGCAGCAGC 1485
|| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1411 AGAAGACATAGAGCAAAACCAATTCCTAACACAGGTAT-AAAAAA-GTAGCAGCAGCAGC 1468
Query 1486 AACAACAACACTCGGCGGTTCTTTGCTAACAGATGGTTTGTAGGATTTTAGGCATCAGAG 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 AACAACAACACTCGGCGGTTCTTTGCTAACAGATGGTTTGTAGGATTTTAGGCATCAGAG 1528
Query 1546 ATCAATTGGTTTGGAATAGTTTCTTTA-GCTTCTT-G---AGGGT-TGTCTGT-CCAG-T 1597
||| ||||||| ||||||||| || | | || || | || || ||| ||| || |
Sbjct 1529 ATCGATTGGTTCCGAATAGTTTATTGAGGGTTGTTGGTCCAGTGTATGTGTGTGTAAGTT 1588
Query 1598 --G----T-G-TA-T--GTG--TAAGTT-ACTAC-ATTAGATATTTTACTTTGTCTTTTC 1642
| | | || | | | || || || | ||| || |||||||||| |||| |
Sbjct 1589 ACGAAATTAGATATTGGGAGAAAAAATTCCCT-CGTTTA-ATGTTTTACTTTGCCTTTGC 1646
Query 1643 TCTATTTGCAGAAGCGAATTTGAGGCAATGTGCTTATCTGTATCAAAATTGTTA 1696
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1647 TCTACTTGCAGAAGCGAATCTGAGGCAATGTGCTTATCTGTATCAAAATTGTTA 1700
Score = 1109 bits (600), Expect = 0.0
Identities = 662/692 (96%), Gaps = 3/692 (0%)
Strand=Plus/Plus
Query 1 TTGGTCAAGAGACATTGATTCTCTCAAATTTCTGCAAAATCAAGCTCAGAGATTCACACC 60
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 33 TTGGTCAAGAGACATTGATTCTCTTAAATTTCTGCAAAATTAAGCTCAGAGATTCACACC 92
Query 61 ACATCTCAAATTGTGCTTCAGA--GTTTCCAAACATTACCAGTCGTTAGGAAGCAATTAC 118
||||| ||||||||| ||||| | ||||||| ||||||||||||||||||||||| ||
Sbjct 93 GCATCTGAAATTGTGC-TCAGAGGGGTTCCAAATATTACCAGTCGTTAGGAAGCAATCAC 151
Query 119 GGGTTGTTTTAGAAATTAGCGAACGTGATAATGGCTAGCAATGAGACGGAAAAATCTAGT 178
| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 152 GAGTTGTTTTAGGAATTAGTGAACGTGATAATGGCTAGCAATGAGATGGAAAAATCGAGT 211
Query 179 AAAGAGAAGGAACCTAAAACACCGCCTTCTTCTTCTGCTGCTCCTCCGTCTTCACAGGAA 238
||||||||||||||||||||||| ||| |||||||| |||| ||||| ||||||||||||
Sbjct 212 AAAGAGAAGGAACCTAAAACACCTCCTCCTTCTTCTACTGCCCCTCCCTCTTCACAGGAA 271
Query 239 CCTTCATCGGCTGTGAGTGCTGGCATGGCTACTCCAGATTGGTCTGGTTTTCAGGCATAT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCTTCATCGGCTGTGAGTGCTGGCATGGCTACTCCAGATTGGTCTGGTTTTCAGGCATAT 331
Query 299 TCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCAAGTCCCCAACCTCACCCTTATATG 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 332 TCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCACCCTTATATG 391
Query 359 TGGGGAGTTCAGCATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGGGGAGTTCAGCATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATG 451
Query 419 TATCCCCCAGGTGGCATGTATGCGCATCCTTCAATGCCTCCGGGTTCTTATCCATATAGC 478
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 452 TATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGGGTTCTTATCCCTATAGC 511
Query 479 CCTTATGCCATGCCTTCCCCAAATGGAATGACTGAAGTTTCTGGGAATACTACAGGCGGC 538
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 CCTTATGCTATGCCTTCTCCAAATGGAATGACTGAAGTTTCTGGCAATACTACAGGCGGC 571
Query 539 ACTGAGGGTGATGCCAAACAATCTGAAGTGAAGGAAAAATTGCCCATCAAAAGATCAAGA 598
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 ACTGATGGTGATGCTAAACAATCTGAAGTGAAGGAAAAATTGCCCATCAAAAGATCAAGA 631
Query 599 GGAAGCTTGGGAAGTTTGAACATGATTACAGGAAAGAACAATGAACCTGGGAAAAACTCG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GGAAGCTTGGGAAGTTTGAACATGATTACAGGAAAGAACAATGAACCTGGGAAAAACTCA 691
Query 659 GGAGCATCAGCTAATGGAGCTTACTCCAAAAG 690
||||||||||||||||||||||||||||||||
Sbjct 692 GGAGCATCAGCTAATGGAGCTTACTCCAAAAG 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5