BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482513
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35540.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2050 0.0
> AT2G35540.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:14927158-14928930 FORWARD LENGTH=1773
Length=1773
Score = 2050 bits (1110), Expect = 0.0
Identities = 1282/1365 (94%), Gaps = 11/1365 (1%)
Strand=Plus/Plus
Query 374 AGGGAGAAATGGTAAGTGGTGGTTGTGGTGATGATGAAACGTCGACGTTTTCGACGGTTT 433
|||| |||||||| || ||||||| ||||| |||||||||||| ||||||||| ||||||
Sbjct 419 AGGGGGAAATGGTTAGCGGTGGTTCTGGTGGTGATGAAACGTCAACGTTTTCGGCGGTTT 478
Query 434 GCTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGAATTTAGGACAAAATTTGATGT 493
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 GTTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGTATTTAGGACAAAATTTGATGT 538
Query 494 GCTCTAGTTGCAAGAAGATTTTTGAGGCAAAGGAAGTTGAGAAGGAAGAAGAGGGTAGAG 553
|| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 539 GCCCTACTTGCAAGAATAGTTTTGAGGCGAAGGAAGTTGAGAAGGAAGAAGAGGGT---- 594
Query 554 ATGGAAGTGAAAATGGAGCTTGTACTTCCAAGATTATAACATATAGTAGGAGGAAGAGGC 613
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 595 A--G-A--GAAAATGGAGCTTGTACTTCCAAGATCATAACATATAGTAGGAGGAAGAGGC 649
Query 614 CTCTTGGTAGCGATGGTGAGAGTCTTAGAAGAGAAGTTGAGACAGGGGAGATGAGTGAGG 673
|| ||| |||||||||||| ||||| | || ||||||||||||||||||||||||| |||
Sbjct 650 CTGTTGATAGCGATGGTGAAAGTCTGATAAAAGAAGTTGAGACAGGGGAGATGAGTCAGG 709
Query 674 GAGGAGCAGAAGCTATTAATGTATCTGAGAGGTTGGATGAAGAAGATGAAGGGATGATGA 733
|| |||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||
Sbjct 710 AAGCAGCAGAAGCTATTAATGTATTTGAGGGGTCGGATGAAGAGGATGAAGGGATGATGA 769
Query 734 CTTTGGCAGAAATGCAATCGGTGATAAAGAGAAACAAATCGAAGGTGAAGTCGAAGATCA 793
||||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct 770 CTTTGGCAGAAATGCAAGCGGTGATAAAGAGAAATAAGTCGAAGGTGAATTCGAAGATCA 829
Query 794 CTGAGAAAAATAGCATTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTCAG 853
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 830 CTGAGAAAGATAGCAGTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTTAG 889
Query 854 CTGATGTCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAAC-AAGGTGAATAATAAA 912
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 890 CTGATGCCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAACGCA-GTGAATAATAAA 948
Query 913 CGGGAAGCTTTAAAGAATAATAAGAATATAAAGAAGAAGAAGATGACGAACCACAAGAAT 972
| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 949 CAAGAAGTTTTAAAGAATAGGAAGAATATAAAGAAGAAGAAGATGGCGAACCACAAGGAT 1008
Query 973 TTAACTGAGATTGTGGATTTAGAATACGTGCCACGGGTTGATAGGAAGAGGGATCGTGGT 1032
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 TTAACTGAGATAGTGGATTTAGAATACGTGCCTCGGGTTGATAGGAAGAGGGATCGTGGT 1068
Query 1033 AAGTTGAGCCAAGAAATCTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1092
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AAGTTAAGCCAAGAAATGTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1128
Query 1093 GACAGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATCTATGATGGTGGTGAT 1152
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1129 GACCGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATATATGATGGTGGTGAT 1188
Query 1153 GACAAAATGCCTCGGAGTTACTGCTTGGTTAGTGAAGTAGTCTCTTTGAACCCTTTTAAG 1212
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1189 GACAAAATGCCTCGGAGTTACTGTTTAGTTAGTGAAGTAGTCTCTTTGAATCCTTTTAAG 1248
Query 1213 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1308
Query 1273 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTGCAGAGAAAGCTTTGATCGAACAAGTG 1332
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1309 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTTCAGAGAAAGCTTTGATAGAACAAGTG 1368
Query 1333 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAGTATACCAAATATAT 1392
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1369 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAATATACCAAATATAT 1428
Query 1393 CCCAGGAAAGGCTCGGTTTGGGCAGTCTACTCAGATACAAATTCAGGTCCTCAGAGAAGA 1452
|| | |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 1429 CCAAAGAAAGGCTCGGTTTGGGCAGTCTACTCAGAGACAAATCCAGGTCTTCAGAGAAGA 1488
Query 1453 AAGACCAGACGCTATGAGATTGTCGTGTGCTTGACGATGTATACTGATGCATATGGCTTG 1512
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1489 AAGACCAGACGCTATGAGATTGTCGTATGCTTGACAATGTATACTGATGCATATGGATTA 1548
Query 1513 AGTGTGGCATATTTGGAGAAGGTAAACGACTGTAGCAACTTGTTCAAGAGACGGGATTAC 1572
||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1549 AGTGTAGCATATTTGGAGAAGGTTAACGACTATAGCAACCTGTTCAAGAGACGGGATTAC 1608
Query 1573 GGGTACAATGCAGTCAGGTGGGTCGAGAAAGATGATGTTGCAGCCTTGCTCTCTCATCAG 1632
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1609 GGGTATAATGCAGTCAGGTGGGTCGAGAAAGAAGATGTTGCAGCCTTGCTCTCTCATCAG 1668
Query 1633 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1728
Query 1693 CTTGATCTTGCTTCTGTTCCTCCTGACTTGGTTTCTGCCACTTAG 1737
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1729 CTTGATCTTGCTTCTGTTCCTCCTGATTTGGTTTCTGCCACTTAG 1773
Score = 595 bits (322), Expect = 4e-169
Identities = 358/376 (95%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTGTATCAGACTCAGAAGTAGAAAAGGAATCCATACACCATAAAGCACTAGCG 60
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTCTGGATCAGACTCAGAAGTAGAAAAGGAATCCATACACCACAAAGCACTAGCG 60
Query 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCGTTAACTCACGCGCGGAAAGCTCTC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCCTTAACTCACGCGCGGAAAGCTCTC 120
Query 121 AGCTTGTCTCCGAACGCGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATTATCAGC 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGCTTGTCTCCGAACACGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATCATCAGC 180
Query 181 TCCGCCGCAACAGTCGCTGGAGGTTTGCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TCCGCCGCCACAGTCGCCGGAGGTTTTCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240
Query 241 TTTTCTCATATCAATACCATTAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTCTCATATTAATACCATAAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300
Query 301 GATAAGAATCCATACGTGGGATGCGAGGAGGGATTCAAGCTTTTGAATGAGGCTTTTAGG 360
||||||||||| || ||||| || |||||||| ||||| |||||||||||||| ||||||
Sbjct 301 GATAAGAATCCGTATGTGGGGTGTGAGGAGGGGTTCAAACTTTTGAATGAGGCCTTTAGG 360
Query 361 GTTTTCTCTGATAAGG 376
||||||||||||||||
Sbjct 361 GTTTTCTCTGATAAGG 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5