BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482514
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35550.1 | Symbols: BPC7, BBR, ATBPC7 | basic pentacysteine ... 1105 0.0
> AT2G35550.1 | Symbols: BPC7, BBR, ATBPC7 | basic pentacysteine
7 | chr2:14929321-14930892 FORWARD LENGTH=1295
Length=1295
Score = 1105 bits (598), Expect = 0.0
Identities = 692/736 (94%), Gaps = 12/736 (2%)
Strand=Plus/Plus
Query 138 CGAGCTGCGACGTGAAGGTGTGATCTTTCCACTGAAACTAGCTATCAAGATGAATTCATT 197
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGAGCTGCAACGCGAAGGTGTGATCTTTCCACTGAAACTAGCTATCAAGATGAATTCATT 351
Query 198 TCCTTCACAAAA-CTTGATGCTATCTGCTACAAATGCAAACAAGGACGCAAGCTTGCGTA 256
|||| ||||||| ||| ||||||||||||||||| |||||||||||| || |||||||||
Sbjct 352 TCCTGCACAAAACCTT-ATGCTATCTGCTACAAACGCAAACAAGGACTCAGGCTTGCGTA 410
Query 257 CGTCTAATGCTCATTGGTTACATTCCTGTATCGCCGTTCCAAAGACCACAGGCATTGATC 316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 411 CGTCTAATGCTCATTGGTTACATTCATGTATCGCCGTTCCAAAGACCACAGGCATTGATC 470
Query 317 TTTCTCAAGCAA-CTCCTGCTGAAGGTGTGATGGTGCCTCAATCTCGTTTGTTTCCTCCT 375
|||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 471 TTTCTC-AGGAACCTCCTGCTGAAGGTGTGATGGTGCCTCAATCTCATTTGTTTCCTCCT 529
Query 376 CCTACTAGAGATTCCAGAAATGATA-TGGAAACTGTGAAACAGAAGTCTGTAAATCAGTC 434
|||| ||||||||||||||| |||| | |||||||||||||||||||| |||||||||||
Sbjct 530 CCTATTAGAGATTCCAGAAACGATACT-GAAACTGTGAAACAGAAGTCCGTAAATCAGTC 588
Query 435 TCCTTTGAAATCTTTGAAGCCAAACCCGCCAAGGAAGAAACGCTCTGCATCCAACAAGTC 494
||||| |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 589 TCCTTCGAAAGCTTTGAAGCCAAAACCGCAAAGGAAGAAACGCTCTGTATCCAACAAGTC 648
Query 495 AAAGAAAACA-CTGAGCATACCAGAAACAAAACGCGAGAAAAAGAATCTGGACATCAACA 553
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 649 AAAGAAAACACCT-AGCATACCAGAAACAAAACGTGAGAAAAAGAATCTGGACATCAACA 707
Query 554 TTGACATCTCAAGCTTTGATACTTCTGGGGTTCCTCCTCCTGTTTGTTCATGTACAGGCG 613
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 708 TTGACATCTCAAGCTTTGATACTTCTGGGGTTCCTCCTCCTGTATGTTCATGTACAGGCG 767
Query 614 TTTCAAGGGTTTGCTACAAGTGGGGCATGGGCGGTTGGCAATCCTCGTGCTGTACCATCA 673
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 768 TTTCAAGGGTTTGCTACAAATGGGGCATGGGCGGTTGGCAATCCTCATGTTGTACCATCA 827
Query 674 GCATATCGACATACCCACTACCCATGAGCACCACAAGACCCAGG-GTTCGTCTTGCTGGA 732
||||||||||||||||||||||||||||||| |||||||| || | ||||||||| |||
Sbjct 828 GCATATCGACATACCCACTACCCATGAGCACAACAAGACCT-GGAGCTCGTCTTGCAGGA 886
Query 733 AGAAAAATGAGCAATGGTGCTTATGTCAAGCTCCTTGCTAGGCTTGCTGG-CGAAGGTTA 791
|||||||||||||||||||||||||| ||||||||||| |||||||| || |||||| ||
Sbjct 887 AGAAAAATGAGCAATGGTGCTTATGTTAAGCTCCTTGCGAGGCTTGC-GGACGAAGGCTA 945
Query 792 TAACCTCTCTCACCCTGTTGATCTCAAGAACCATTGGGCCAGACACGGTACTAACAAGTT 851
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGACCTCTCTCACCCTCTTGATCTCAAGAACCATTGGGCCAGACACGGTACTAACAAGTT 1005
Query 852 TGTGACTATCAAGTAG 867
|||||| |||||||||
Sbjct 1006 TGTGACCATCAAGTAG 1021
Score = 161 bits (87), Expect = 8e-39
Identities = 123/139 (88%), Gaps = 7/139 (5%)
Strand=Plus/Plus
Query 5 GAGAGAAAGAGTGCGCAGAGTGAGC--GAGCATAGCGGTGGAGTGTTGTCACTGCTAACT 62
||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||
Sbjct 1 GAGAGAAAGAGTGCGCAGAGTGAGCGAGAGCATAGCGGTGGAGTGTCGCCACTGGTAACT 60
Query 63 CTTGACGATTTCTCTTGTTTACGT-AGCCGAAAAGATCACTC-TCTTTTGGTGTCGACTC 120
| |||||||| ||| |||| ||| ||||| ||||||||||| | |||||||||||||||
Sbjct 61 C-CGACGATTTTTCTCGTTTGCGTAAGCCG-AAAGATCACTCTTTTTTTGGTGTCGACTC 118
Query 121 TGTTTCTGG-GTATGATTC 138
|||||||| |||||||||
Sbjct 119 TGTTTCTGCCGTATGATTC 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5