BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482518
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 924 0.0
> AT2G35605.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr2:14946063-14947276 FORWARD LENGTH=677
Length=677
Score = 924 bits (500), Expect = 0.0
Identities = 620/676 (92%), Gaps = 15/676 (2%)
Strand=Plus/Plus
Query 1 TTCAGCTTTCAAAGTCCGTG-GTTTGATCTAGGGTTTTAGACACAGAGCTCTCTCTCCTT 59
||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 11 TTCAGTTTTCAAAGTCTGTGAGTTTGATCTAGGGTTTTAG--ACAGAGCTCTCTCTCCTT 68
Query 60 CCAAATTCAAAACTGTGTGAAGAAGAAAAATGGCGACAGTTTCTAGGGTTTTTGGAGCTT 119
|||| |||||||||||||||||||| |||| | | | || |||||||| |||||||
Sbjct 69 CCAATTTCAAAACTGTGTGAAGAAG-AAAA-----A-A-TGTCGAGGGTTTTCGGAGCTT 120
Query 120 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCTCCGGCGCCAAAAATGGTAGACAAGGTA 179
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 121 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCACCGGCGCTAAAACTGGTAGACAAGGTA 180
Query 180 CTGGTATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTACCTTTATTGGGGAAAACG 239
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CTGGCATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTAATTTTATTGGGGAAAACG 240
Query 240 AAGTCTCTCGCACAACCGCCGTCAAGAAAATCTGGGAATACATCAAGCTTAACAATCTTC 299
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 AAGTCTCTCGCACAACTGCCGTCAAGAAAATCTGGGAATATATCAAGCTTAACAATCTTC 300
Query 300 AGAATCCGGAGAACAAAAGGGAGATACTATGCGATGAGCAACTGAAGACGATCTTCAGTG 359
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 AGAATCCGGTGAACAAAAGGGAGATACTATGCGATGAGCAACTCAAGACGATCTTCAGTG 360
Query 360 GGAAAGACACTGTCGGGTTCCTCGAGATCTCGAAACTTCTGTCTCAACATTTTCCTAAGT 419
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 361 GGAAAGACACTGTCGGGTTCCTCGAGATTTCAAAACTTCTGTCTCAACATTTTCCTAAGT 420
Query 420 CTGCTTGATTCTCACATTGCATTATCCTTAGCTTATTTTACTCTATCATCCAAGAAATGG 479
||||||||||| ||||||||||| |||||||||| | ||||| |||||||||||||| ||
Sbjct 421 CTGCTTGATTCCCACATTGCATTTTCCTTAGCTTCTATTACTATATCATCCAAGAAACGG 480
Query 480 CTCTTCtttttttGTATCTTCTTATGGGTGATCTTTATTGGTTATATATAGACTACCAAC 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 481 TTCTTCTTTTTTTGTATCTTTTTATGGGTGATCTTTATTGGTTATATATAGACTACCAGC 540
Query 540 CAGTTCCCATCTGTCTGAGACGTTTTATGTATTGATGATGATCCAAGGTCAATTTAGTTT 599
|||||||||||||||| ||||| ||||||||| ||||||| | ||| |||||||||| |
Sbjct 541 CAGTTCCCATCTGTCTTAGACGGTTTATGTATGGATGATGGTTCAAAGTCAATTTAGCTA 600
Query 600 ATGGT--TT-GTGGTCTTGGAGCTTGTCTATCTCTACTATAATCTTCTTCGATCTCAATG 656
||||| || ||| ||||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct 601 ATGGTGGTTTGTG-TCTTGGAACTTTTTTATCTCTACTATAATCTTCTTCCATCTCAATA 659
Query 657 TGACATGGACTCCTTC 672
|| |||||||||||||
Sbjct 660 TGGCATGGACTCCTTC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5