BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482524
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35635.1 | Symbols: UBQ7, RUB2 | ubiquitin 7 | chr2:14980970... 933 0.0
AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquit... 556 6e-158
AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin e... 209 2e-53
AT1G65350.1 | Symbols: UBQ13 | ubiquitin 13 | chr1:24272518-242... 145 6e-34
> AT2G35635.1 | Symbols: UBQ7, RUB2 | ubiquitin 7 | chr2:14980970-14982116
FORWARD LENGTH=712
Length=712
Score = 933 bits (505), Expect = 0.0
Identities = 581/617 (94%), Gaps = 8/617 (1%)
Strand=Plus/Plus
Query 1 CCCGTCGCACAGACCCGCCTAAGAATCCGAGAGAGAAGAAGAGATAATGCAGATCTTCGT 60
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 CCCATCGCACAGACCCCCCTAAGAATCCGAGAGAGAAGAAGAGATAATGCAGATCTTCGT 88
Query 61 CAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAGCGACACCATCGACAA 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 89 CAAAACCCTCACCGGCAAAACTATAACCCTAGAAGTTGAGAGCAGCGACACCATCGACAA 148
Query 121 TGTCAAAGCCAAAATCCAGGACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTT 180
||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 149 TGTTAAAGCCAAAATCCAGGACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTT 208
Query 181 TGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTC 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 209 TGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCTGATTACAACATCCAGAAAGAGTC 268
Query 241 TACTCTTCATCTTGTCTTGAGGCTCAGAGGTGGAACCATGATCAAGGTCAAGACGCTCAC 300
|||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 269 TACTCTTCATCTTGTCCTCAGGCTCAGAGGTGGAACCATGATCAAGGTGAAGACACTCAC 328
Query 301 TGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATTGATCGGATCAAGGAACG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 329 TGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATTGATCGGATCAAAGAACG 388
Query 361 GGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTCATCTATGCCGGGAAACA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 389 TGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTCATATATGCCGGAAAACA 448
Query 421 GCTTGCTGATGACAAAACGGCCAAAGATTACGCCATAGAGGGTGGCTCTGTTCTTCATTT 480
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 449 GCTTGCTGATGACAAAACGGCCAAAGATTATGCGATAGAGGGAGGCTCTGTTCTTCATTT 508
Query 481 GGTTCTTGCTCTTAGGGGTGGTCTTCTCTAATCTTA-TAAATAAGATT--CAACAAACAT 537
||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct 509 GGTTCTTGCTCTTAGGGGTGGTCTTCTCTGATCTTAATAAATAAGCTTTTCAACAAACAT 568
Query 538 -TGTTCCCTCTCTATTTTCCTCCTAATGTGGAATTCATGACA-A--AAATATGGATATGG 593
| ||||||| ||||| ||||||| ||||||||||||||||| | ||| || | |||||
Sbjct 569 CTTTTCCCTCACTATTGTCCTCCTTATGTGGAATTCATGACACACCAAA-ATTGCTATGG 627
Query 594 GAAATTTGAATATTATG 610
|||||| ||||||||||
Sbjct 628 GAAATTGGAATATTATG 644
> AT1G31340.1 | Symbols: RUB1, NEDD8, ATRUB1 | related to ubiquitin
1 | chr1:11217845-11219458 REVERSE LENGTH=743
Length=743
Score = 556 bits (301), Expect = 6e-158
Identities = 408/460 (89%), Gaps = 6/460 (1%)
Strand=Plus/Plus
Query 46 AATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAG 105
|||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 41 AATGCAGATCTTCGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTCGAAAGCAG 100
Query 106 CGACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAGAGGGTATTCCACCTGATCA 165
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 101 CGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAAGAGGGAATACCACCTGATCA 160
Query 166 ACAAAGGCTGATTTTTGCTGGTAAGCAA-TTGGAAGATGGCCGGACCTTAGCCGATTACA 224
||| ||| |||| |||||||||||||| ||| ||||||| | || ||||| |||||||
Sbjct 161 ACAGAGGTTGATATTTGCTGGTAAGCAGCTTG-AAGATGGTAGAACATTAGCGGATTACA 219
Query 225 ACATCCAGAAAGAGTCTACTCTTCATCTTG-TCTTGAGGCTCAGAGGTGGAACCATGATC 283
|||| |||||||| || |||||||| |||| | |||||||| || ||||| || |||||
Sbjct 220 ACATTCAGAAAGAATCGACTCTTCA-CTTGGTATTGAGGCTTAGGGGTGGGACTATGATT 278
Query 284 AAGGTCAAGACGCTCACTGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATT 343
||||| ||||| ||||| || || ||||| ||||||||||||||||||||||| ||||||
Sbjct 279 AAGGTGAAGACTCTCACAGGGAAGGAAATTGAGATTGATATCGAACCAACCGATACTATT 338
Query 344 GATCGGATCAAGGAACGGGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTC 403
|||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 339 GATCGGATTAAGGAACGTGTTGAGGAGAAAGAAGGTATCCCTCCTGTTCAACAAAGGCTA 398
Query 404 ATCTATGCCGGGAAACAGCTTGCTGATGACAAAACGGCCAAAG-ATTACGCCATAGAGGG 462
||||| ||||| |||||||| ||||||||||||||||| |||| | ||| |||||||||
Sbjct 399 ATCTACGCCGGAAAACAGCTAGCTGATGACAAAACGGC-AAAGGACTACAACATAGAGGG 457
Query 463 TGGCTCTGTTCTTCATTTGGTTCTTGCTCTTAGGGGTGGT 502
||||||||||||||| |||||||||| ||||||||||||
Sbjct 458 AGGCTCTGTTCTTCATCTGGTTCTTGCCCTTAGGGGTGGT 497
> AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin
extension protein 1 | chr3:19505629-19506932 FORWARD LENGTH=677
Length=677
Score = 209 bits (113), Expect = 2e-53
Identities = 187/224 (83%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 47 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAGC 106
|||||||||||||| |||||| | |||||||| || || || || ||||| |||||||||
Sbjct 40 ATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGC 99
Query 107 GACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAGAGGGTATTCCACCTGATCAA 166
|||||||||||||||||||| ||||| ||||| |||||||| || || || || |||||
Sbjct 100 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAG 159
Query 167 CAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGATTACAAC 226
|| || |||| || || || ||||| | ||||||||||| || || || || ||||||
Sbjct 160 CAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAAC 219
Query 227 ATCCAGAAAGAGTCTACTCTTCATCTTGTCTTGAGGCTCAGAGG 270
||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 220 ATCCAGAAAGAATCTACACTTCATCTTGTGTTGAGGCTTAGAGG 263
> AT1G65350.1 | Symbols: UBQ13 | ubiquitin 13 | chr1:24272518-24277275
REVERSE LENGTH=960
Length=960
Score = 145 bits (78), Expect = 6e-34
Identities = 170/215 (79%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 47 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAGC 106
||||| ||||| || ||||| | || ||||| || || ||| | |||||||||||| |
Sbjct 454 ATGCAAATCTTTGTGAAAACTTTGACAGGCAAGACCATTACCTTGGAGGTTGAGAGC-TC 512
Query 107 -GACACCATCGACAATGTCAAAGCCAAAATCCAGGACAAAG-AGGGTATTCCACCTGATC 164
||||| || || ||||||||||| || || ||||| || | | || || ||||| || |
Sbjct 513 AGACACAATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAATGG-ATCCCACCAGACC 571
Query 165 AACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGATTACA 224
|||| || || || ||||||||||| || | || ||||| |||| || || |||||||
Sbjct 572 AACAGAGACTCATCTTTGCTGGTAAACAGCTCGAGGATGGAAGGACTTTGGCTGATTACA 631
Query 225 ACATCCAGAAAGAGTCTACTCTTCATCTTGTCTTG 259
||||||||||||||||||||||||| ||||| |||
Sbjct 632 ACATCCAGAAAGAGTCTACTCTTCACCTTGTATTG 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5