BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482537
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38 |... 861 0.0
AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamil... 315 4e-85
> AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38
| chr2:15005205-15005789 FORWARD LENGTH=585
Length=585
Score = 861 bits (466), Expect = 0.0
Identities = 548/585 (94%), Gaps = 15/585 (3%)
Strand=Plus/Plus
Query 1 ATGGAACGTGACGACTGCCGGAGGTTTCAGGATTCGCCGGCGCAGACGACGGAGAGAAGA 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAACGTGACGACTGCCGGAGATTTCAGGACTCGCCGGCGCAGACGACGGAGAGAAGA 60
Query 61 GTGAAAAATAATCCAAAGAAGAAAAGAGGCAAAGATGATGATGA--A-AAGGTTGTTTCA 117
|||||| |||| |||||||||||||||| ||||||||||||||| | || ||||||||
Sbjct 61 GTGAAATATAAACCAAAGAAGAAAAGAGCCAAAGATGATGATGATGAGAAAGTTGTTTCG 120
Query 118 AAGCATCCAACTTTCCGAGGTGTAAGAATGAGACAATGGGGAAAATGGGTGTCCGAAATC 177
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCATCCAAATTTTCGAGGTGTCAGAATGAGACAATGGGGAAAATGGGTGTCCGAAATC 180
Query 178 AGAGAGCCAAAGAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACGGCGGAGATGGCG 237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAGAGCCAAAAAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACGGCGGAGATGGCG 240
Query 238 GCGCGTGCTCACGACGTGGCGGCTTTAGCCATCAAAGGCGGTTCTGCACACCTCAACTTC 297
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GCGCGTGCTCACGACGTGGCAGCTTTAGCCATCAAAGGCGGTTCTGCACATCTCAACTTC 300
Query 298 CCGGAGCTCGCTTACCACCTCCCTAGACCAGCTAGTGCCGACCCTAAAGACATCCAAGCT 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGAGCTCGCTTATCACCTCCCTAGACCAGCTAGTGCCGACCCTAAAGACATCCAAGCT 360
Query 358 GCCGCCGCCGCAGCTGCTGCCGC-------A---A--TGGATGTAGAGACGTCTTCGCCG 405
||||||||||||||||| ||||| | | |||||||||||||||||||||||
Sbjct 361 GCCGCCGCCGCAGCTGCAGCCGCTGTGGCCATTGACATGGATGTAGAGACGTCTTCGCCG 420
Query 406 TCGCCGTCTCCCACTGTTACGGAAACGTCATCTCCGGCTATGACAGCACTATCCGAAGAC 465
||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 421 TCGCCATCTCCCACAGTTACGGAAACGTCATCTCCGGCTATGATAGCACTCTCCGACGAC 480
Query 466 GCGTTCTCCGATCTTCCTGATCTCTTGCTCAACGTGAACCATAACATCGACGGCTTCTGG 525
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GCGTTCTCCGATCTTCCTGATCTCTTGCTCAACGTGAACCATAACATCGATGGCTTCTGG 540
Query 526 GACTCTTTTCCCTACGAAGAACCCTTCCTCTCTCAAAGTTACTAG 570
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GACTCTTTTCCCTATGAAGAACCCTTCCTCTCTCAAAGTTACTAG 585
> AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:9420917-9421759 REVERSE LENGTH=843
Length=843
Score = 315 bits (170), Expect = 4e-85
Identities = 243/278 (87%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 104 AAAAGGTTGTTTC-AAAGCATCCAACTTTCCGAGGTGTAAGAATGAGACAATGGGGAAAA 162
|||||| |||||| ||| || |||| ||| || || || |||||||||||||||||||||
Sbjct 192 AAAAGG-TGTTTCTAAA-CAACCAAATTTTCGTGGGGTCAGAATGAGACAATGGGGAAAA 249
Query 163 TGGGTGTCCGAAATCAGAGAGCCAAAGAA-GAAATCAAGAATCTGGCTCGGTACTTTCTC 221
|||||||| ||||| ||||| |||| ||| |||||||||||| |||||||||||||||||
Sbjct 250 TGGGTGTCTGAAATTAGAGAACCAA-GAAAGAAATCAAGAATATGGCTCGGTACTTTCTC 308
Query 222 CACGGCGGAGATGGCGGCGCGTGCTCACGACGTGGCGGCTTTAGCCATCAAAGGCGGTTC 281
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 309 TACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCATCAAAGGTGGCTC 368
Query 282 TGCACACCTCAACTTCCCGGAGCTCGCTTACCACCTCCCTAGACCAGCTAGTGCCGACCC 341
||| ||||| || ||||||||||| |||||||| | || ||||| ||||| || |||||
Sbjct 369 TGCCCACCTTAATTTCCCGGAGCTAGCTTACCATTTGCCGAGACCGGCTAGCGCGGACCC 428
Query 342 TAAAGACATCCAAGCTGCCGCCGCCGCAGCTGCTGCCG 379
||||||||| |||| |||||||||||||| |||||||
Sbjct 429 TAAAGACATTCAAGAAGCCGCCGCCGCAGCAGCTGCCG 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5