BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482539
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35710.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 2669 0.0
AT4G16600.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 1053 0.0
> AT2G35710.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr2:15010796-15014284 REVERSE LENGTH=1837
Length=1837
Score = 2669 bits (1445), Expect = 0.0
Identities = 1707/1827 (93%), Gaps = 43/1827 (2%)
Strand=Plus/Plus
Query 1 TAATGTTCTCATTGGCCAATCACCATTATACCTTTTTAACCCTTCACAGTCTCCCAGAAA 60
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 12 TAATGTTGTCATTGGCCAGTCGCCATTATACCTTTTTAACCCTTCACAGTCTCCCAGAAA 71
Query 61 CCTCCCTCTCTCTTTGATACAGTCTCTG----TATATATATACGCGTATGCGTTTACACA 116
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 72 CCTCCCTTTCTCTTTGATACATTCTCTGTATATATATATATACGCGTATGCGTTTACACA 131
Query 117 TTCCCTCaaaa-----aaaTTC-AG----A-----TTC--TTGA-------TA--AATTC 150
|| | | |||| | |||| || | ||| |||| || |||||
Sbjct 132 TT-CTTTAAAAGTTTCAGATTCTAGATAAATTCTTTTCATTTGATTTGTTTTAGCAATTC 190
Query 151 GGACATTGTACAGAGAAATCAAGAATGGATTTGCTGAGAGGCTTTGTGTTCTTGTCTTTG 210
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 191 GGACATTGTACAGAGAAATCAAGAATGGATTTGCAGAGAGGCTTTGTGTTCTTGTCTTTG 250
Query 211 GTTCTATCTTTTATGATAATCGAAACGACGGCGTATCGAGAGAGACA---GCTGCTGCTG 267
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 251 GTTCTATCTTTTATGATAATCGAAACGACGGCGTATCGAGAGAGACAGCTGCTGCTGCTG 310
Query 268 C-A--ACCGCAAGAAACGGCGATAGATACCGCAAACGCGGTGGTGACGGTTCAAGATCGG 324
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CAACCACCGCAAGAAACGGCGATAGATACCGCAAACGCGGTGGTGACGGTTCAAGATCGA 370
Query 325 GGTTTAAAGACGCGGCGGCCGGAGCATAAGAACGCCTACGCAACGATGATGTACATGGGG 384
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 371 GGTTTGAAGACGCGGCGACCGGAGCATAAGAACGCATACGCAACGATGATGTACATGGGG 430
Query 385 ACGCCAAGAGACTACGAGTTCTACGTTGCTACTCGTGTTTTGATCAGATCGTTGAGAAGT 444
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 431 ACGCCAAGAGACTACGAGTTCTACGTTGCGACACGTGTTTTGATCAGATCGTTGAGAAGT 490
Query 445 CTCCACGTGGAAGCTGATCTTGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGATGGGTT 504
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 491 CTTCACGTGGAAGCTGATCTCGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGATGGGTT 550
Query 505 CAAACCTTGGAAGAGGAAGATGGAGCCAAAGTGGTGAGAGTTGAAAATGTGGATAATCCA 564
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 551 CAAACCTTGGAAGAGGAAGATGGAGCTAAAGTGGTGAGAGTTGAAAATGTGGATAATCCA 610
Query 565 TACAGGAGACAGACCAACTTCAACAGTAGATTCAAGCTTACACTGAACAAGCTCTACGCT 624
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 611 TACAGGAGACAGACCAACTTCAACAGTAGATTCAAGCTTACTCTAAACAAGCTCTACGCT 670
Query 625 TGGGCTTTGTCTGACTACGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTCCTTAAG 684
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 671 TGGGCTTTGTCTGATTACGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTTCTTAAG 730
Query 685 AAAACCGACGAGCTGTTCCAGTGCGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGCATC 744
||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 731 AAAGCCGACGAGTTGTTCCAGTGTGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGTATC 790
Query 745 TTCCACACTGGCCTCTTCGTGTTGCAGCCTTCAGTGGAGGTGTTCAAGGACATGCTCCAT 804
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 791 TTCCACACTGGTCTCTTCGTGTTGCAGCCATCAGTGGAAGTGTTCAAGGACATGCTCCAT 850
Query 805 GAGCTACAAGTTGGAAGAAAGAATCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGTTAC 864
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 851 GAGCTACAAGTTGGAAGAAAGAATCCTGATGGAGCTGATCAAGGTTTTCTTGTCAGTTAC 910
Query 865 TTCTCTGATCTTCTAGACCAACCTCTCTTTCGTCCTCCGAGTAATGGATCTGTGCTTGGT 924
|||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||| |
Sbjct 911 TTCTCTGATCTTCTTGACCAACCTCTCTTTAGTCCTCCGAGTAACGGATCTGTACTTAAT 970
Query 925 GGCCACTTGAGACTTCCCTTGGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTA 984
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 971 GGTCACTTGAGACTTCCCTTAGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTA 1030
Query 985 AGATGGAACATACCCTGTGGACCAAACAGTGTGATTACATTCCCAGGAGCTGTTTGGTTA 1044
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1031 AGATGGAACATACCCTGTGGACCAAACAGTGTGATTACATTCCCGGGAGCTGTTTGGTTA 1090
Query 1045 AAGCCATGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTATCTCATGGCACGAGCAG 1104
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1091 AAGCCATGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTTTCTCATGGCACGAGCAG 1150
Query 1105 CGCCGCACCACTATAGGGTACTCAGCAGAAATGCCTTTGGTCATAATTCAAGCAGTGTTC 1164
|| ||| ||||||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct 1151 CGTCGCGCCACTATAGGGTACTCAGCCGAAATGCCTTTGGTTATAATCCAAGCAATGTTT 1210
Query 1165 TACCTTGGAATCATACTGGTCACACGACTAGCTCGCCCTAACATAACCAAGCTATGTTAT 1224
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1211 TACCTTGGAATCATAGTGGTTACACGACTAGCTCGTCCTAACATAACCAAGCTATGTTAT 1270
Query 1225 CGCCGCTCTGACCGCAACTTAACAACGATCCAAGCAGGTTTTAAGTCGGTCGCGCTTCTC 1284
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 1271 CGCCGCTCTGACCGCAACTTAACAACGATCCAAGCTGGTTTTAAGTTGATCGCGCTTCTC 1330
Query 1285 TTTGTAGTTGCAGCCTACATCTTCCCATTCTTCACCATCCCTCACACCATCCACCCACTC 1344
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1331 TCTGTAGTTGCAGCCTACATCTTCCCATTCTTCACCATCCCTCACACTATCCACCCACTC 1390
Query 1345 ATCGGCTGGTCGCTCTACTTGATGGCTTCTTTTGCTCTCTCCTCCATTTCAATCAACACT 1404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1391 ATCGGCTGGTCGCTCTACTTGATGGCTTCTTTTGCTCTCTCTTCCATTTCAATCAACACT 1450
Query 1405 CTCCTCCTCCCAACACTCCCTGTTCTCACTCCATGGCTCGGCATTCTCGGGACGCTTCTC 1464
|||||||||||||| ||||||||||||||||||||||| || |||||||| || || ||
Sbjct 1451 CTCCTCCTCCCAACGCTCCCTGTTCTCACTCCATGGCTAGGAATTCTCGGCACTCTCCTT 1510
Query 1465 GTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCGGTTTTCGCATAC 1524
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1511 GTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCAGTTTTCGCATAC 1570
Query 1525 GCGTTTTGTTGCGCACCTTTTGTGTGGGTTTCATTCCGCAAGATCACATCGCACCTCCAG 1584
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1571 GCATTTTGTTGCGCACCCTTTGTGTGGGTTTCATTCCGCAAAATCACATCGCACCTCCAG 1630
Query 1585 GTTTTGATTGAGAAAGAGGTGTTGTTTCCGCGATTGGGAGATTCAGGGACCACTTCAGGC 1644
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 1631 GTTTTGATTGAGAAAGAGGTGTTGTTCCCGCGATTGGGAGACTCAGGGGTCACTTCAGGC 1690
Query 1645 TTCAGCAAATTGTATTAGGCAGTCTTTATTTGACACATTGTTTATAT--ATATAAAGGAT 1702
||||||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||
Sbjct 1691 TTCAGCAAATTGTATTAGGGAGTCTTTATTTGACATATTGTTTCTCTGTATATAAAGGAT 1750
Query 1703 TATTATTGTTTCATTCACATTACATTTATATCAACTCAGC-CTAACCTTATTTCTTTAAC 1761
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||
Sbjct 1751 TATTATTGTTTCATTCACATTACATTTATATCAACTCA-CTCTAACCTTCTTTCTTTTAC 1809
Query 1762 CTAGT-AAGAGTATCAATTTCGGTAGC 1787
||||| || ||||||||||||||||||
Sbjct 1810 CTAGTCAA-AGTATCAATTTCGGTAGC 1835
> AT4G16600.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr4:9350039-9352707 FORWARD LENGTH=1485
Length=1485
Score = 1053 bits (570), Expect = 0.0
Identities = 1221/1525 (80%), Gaps = 85/1525 (6%)
Strand=Plus/Plus
Query 175 ATGGATTTGCTGAGAGGCTTTG-TGTTCT-TGTCTTTGGTTCTATCT-TTTATGATAATC 231
|||||||| | ||| ||||| |||||| | | || |||||| ||| ||| |||| |||
Sbjct 1 ATGGATTTACAAAGA-ACTTTGATGTTCTCT-TGTTGGGTTCTGTCTCTTT-TGATCATC 57
Query 232 GAAACGACGGCGTATCGA-GAGAGACAGCTGCTGCTGCAACCGCAAGAAACGGCGATAGA 290
||||||| |||||| | |||| ||||||| | | || |||| ||||| | || | |
Sbjct 58 AAAACGACAGCGTAT-AACGAGAAACAGCTG-T--TCCAGCCGCTTGAAAC-G-GA-A-A 109
Query 291 TACCGCAAACGCGGTG-GTGACGGTTCA-AGATCGGGGTTTAAAGA--C-GCGGCGGCCG 345
| |||||||||| || | ||||| | || || || ||||||| | ||||||||||
Sbjct 110 -A-CGCAAACGCGATGACCG-CGGTT-ATGGAGCGAGGATTAAAGACGCAGCGGCGGCCG 165
Query 346 GAGCATAAGAACGCCTACGCAACGATGATGTACATGGGGACGCCAAGAGACTACGAGTTC 405
||||| |||||||| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct 166 GAGCACAAGAACGCTTATGCGACGATGATGTACATGGGAACACCAAGAGACTACGAGTTC 225
Query 406 TACGTTGCTACTCGTGTTTTGATCAGATCG-TTGAGAAGTCTCCACGTGGAAGCTGATCT 464
|||||||| || ||||| |||||||||||| || || |||||||||||||| |||||| |
Sbjct 226 TACGTTGCGACACGTGTCTTGATCAGATCGCTTAAG-AGTCTCCACGTGGACGCTGATAT 284
Query 465 TGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGA-TGGGTTCAAAC-CT-TGGAAGAGGA 521
||||| || || || |||||||||||| | | | ||| ||| || || ||||||| ||
Sbjct 285 CGTCGTTATAGCCTCCCTCGACGTTCCTAT-CAACTGGATTC--ACGCTCTGGAAGAAGA 341
Query 522 AGATGGAGCCAAAGTGGTGAGAGTTGAAAATGTGGATAATCCATACAGGAGACAGACCAA 581
||||||||| ||||| |||||||| || ||| | || |||||||||| || ||| |||||
Sbjct 342 AGATGGAGCTAAAGTAGTGAGAGTAGAGAATCTTGAGAATCCATACAAGAAACAAACCAA 401
Query 582 CTTCAACAGTAGATTCAAGCTTACACTGAACAAGCTCTACGCTTGGGCTTTGTCTGACTA 641
|||| ||| ||||||||||||| || |||||||||||||||||| || | ||||| ||
Sbjct 402 CTTCGACAACAGATTCAAGCTTAGTCTAAACAAGCTCTACGCTTGGTCTCTCTCTGATTA 461
Query 642 CGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTCCTTAAGAAAACCGACGAGCTGTT 701
|||||||| || ||||| |||| ||| || ||||| || ||||| ||||||||||| ||
Sbjct 462 TGACCGTGTTGTAATGCTTGATGTCGACAATCTCTTTCTCAAGAACACCGACGAGCTCTT 521
Query 702 CCAGTGCGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGCATCTTCCACACTGGCCTCTT 761
|||||| || | || ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 522 CCAGTGTGGCCAATTTTGTGCTGTCTTCATCAACCCTTGCATCTTCCACACTGGTCTCTT 581
Query 762 CGTGTTGCAGCCTTCAGTGGAGGTGTTCAAG-GACATGCTCCATGAGCTACAAGTTGGAA 820
||||||||||| ||| ||||||| || || |||||||| |||||||| ||| | ||
Sbjct 582 TGTGTTGCAGCCATCAATGGAGGTCTT-TAGAGACATGCTTCATGAGCTTGAAG-T-AAA 638
Query 821 GA-A-AGAATCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGTTACTTCTCTGATCTT-C 877
|| | | || |||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 639 GAGAGATAACCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGCTACTTCTCTGAT-TTAC 697
Query 878 T-AGACCAACCTCTCTTTCGTCCTCC----GAGTAATGG-ATCTGTGCTTG-GTGGCCAC 930
| | | || ||||||||||||||||| || ||| | | | | |||| | || ||
Sbjct 698 TCA-ATCAGCCTCTCTTTCGTCCTCCTCCCGA-TAACCGCACC-GCGCTTAAG-GGACAT 753
Query 931 TTGAGACTTCCCTTGGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTAAGATGG 990
|| || ||||| ||||| || ||||||||||| ||||||| ||| |||||||| ||||||
Sbjct 754 TTTAGGCTTCCTTTGGGATATCAAATGGACGCATCTTATTACTACCTTAAGCTCAGATGG 813
Query 991 AACATACCCTGTGGACCAAACAGTGTGATTACATTCCCAGGAGCTGTTTGGTTAAAGCCA 1050
||| |||| |||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 814 AACGTACCATGTGGACCAAACAGTGTGATAACGTTCCCAGGAGCAGTATGGTTAAAGCCA 873
Query 1051 TGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTATCTCATGGCACGAGCAGCGCCGC 1110
||||| ||||||||||||||||||||||| |||| | ||||||||| | || ||||||
Sbjct 874 TGGTATTGGTGGTCATGGCCTGTTCTTCCTTTAGGCCTTTCATGGCACCACCAACGCCGC 933
Query 1111 -ACCACTAT-AGGGTACTCAGCAGAAATGCCTTTGGTCATAATTCAAGCAGTGTTCTACC 1168
|| || || || || |||||||| ||||||| |||| ||| ||||||||||||||||
Sbjct 934 TAC-ACGATTAGT-TATTCAGCAGAGATGCCTTGGGTCCTAACCCAAGCAGTGTTCTACC 991
Query 1169 TTGGAATCATACTGGTCACACGACTAGCTCG-CCCTAACATAACCAAGCTATGTTATCGC 1227
| ||||| ||||| |||||||| ||||| || ||| ||||| |||||||||||||| ||
Sbjct 992 TAGGAATTATACTAGTCACACGTCTAGCGCGTCCC-AACATGACCAAGCTATGTTACCGA 1050
Query 1228 CGCTCTGACC-GCAA-CTTAA-CAACGATCCA-AGCAGGTTTTAAGTCGGTCGCGCTTCT 1283
|| ||||| | || || || || |||||| | ||| ||| |||| || || || ||
Sbjct 1051 CGTTCTGATAAG-AATCT-AAGCAT-GATCCAGA-CAGCTTTCAAGTTTGTTGCACTCCT 1106
Query 1284 CTTTGTAGT-TGCAGCCTACATCT-TCCCATTCTTCACCATCCCTCACACCATCCACCCA 1341
|||| | | | |||||||||| | | |||||||||| |||||| || || ||||||||
Sbjct 1107 CTTTATCCTCT-CAGCCTACAT-TATACCATTCTTCATCATCCCACAGACGATCCACCCG 1164
Query 1342 CTCATCGGCTGGTCGCTCTACTTGAT-GGCTTCTTTTGCTCTCTCCT-CCATTTCAATCA 1399
||||| || ||||| |||||||| | |||| |||| |||||||| | |||| | ||||
Sbjct 1165 CTCATTGGTTGGTCTCTCTACTTAACCGGCTCCTTT-GCTCTCTC-TACCATACCCATCA 1222
Query 1400 ACACTCTCCTC-CT-CCCAACACTCCCTGTTC-TCACTCCATGGCTCGGCATTCTCGGGA 1456
|| | || || || |||| |||||||| | | || || ||||| |||||| ||||||
Sbjct 1223 ACGC-CTTCTTGCTTCCCATT-CTCCCTGT-CATAACACCGTGGCTTGGCATTTTCGGGA 1279
Query 1457 CGCTTCTCGTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCGGTTT 1516
| || ||||| ||||| || |||| || |||||||| || || ||||| ||||||||||
Sbjct 1280 CACTCCTCGTGATGGCTTTTCCTTCTTATCCTGATGGCGTTGTTAGAGCATTGTCGGTTT 1339
Query 1517 TCGCATACGCGTTTTGTTGCGCACCTTTTGTGTGGGTTTCATTCC-GCAAGATCACATCG 1575
||| || || |||||||| ||||| ||| | ||||| || || | ||||||||||||
Sbjct 1340 TCGGGTATGCATTTTGTTGTGCACCGTTTCTATGGGTCTCCTTTGTG-AAGATCACATCG 1398
Query 1576 CACCTCCAGGTTTTGATTGAGAAAGAGGTGTTGTTTCCGCGATTGGGAGATTCAGG-GAC 1634
|| || ||| || ||||||| |||||||| ||||||||||| ||||| || || || | |
Sbjct 1399 CATCTTCAGATTATGATTGACAAAGAGGTTTTGTTTCCGCGGTTGGGTGAATCCGGAGTC 1458
Query 1635 CACTTCAGG-CTTCAGCAAATTGTA 1658
||||| || || ||||||||||||
Sbjct 1459 -ACTTCTGGTCT-CAGCAAATTGTA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88403159745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5