BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482541
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35720.1 | Symbols: OWL1 | DNAJ heat shock N-terminal domain... 3114 0.0
> AT2G35720.1 | Symbols: OWL1 | DNAJ heat shock N-terminal domain-containing
protein | chr2:15016670-15020011 FORWARD LENGTH=1975
Length=1975
Score = 3114 bits (1686), Expect = 0.0
Identities = 1887/1983 (95%), Gaps = 17/1983 (1%)
Strand=Plus/Plus
Query 1 GACGAA-AAAAGGGAAAGAAGAATGGACTTGGGAATCAAGCAAGGGTCAAAGCGTC-A-A 57
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 GACGAAGAAAA-AGAAAGAAGAATGGACTTGGGAATCAAGCAAGGGTCAAAGCGTCAACA 59
Query 58 AGCGAGCTAAAGCCGAGAGCAGCGGTGTC--AAAACCTCATCCGCCGCAAAACCCCTAAA 115
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 AGCGAGCTAAAGCCGAGAGCAGCGGTGTCAAAAAACCTCATCCGCCGCAAAACCCCTAAA 119
Query 116 ACCCTCCGGCGCCGGAAATTATCTCTTTCTTATATCCCTTTCCTTTCG-CTGTCTCTGTC 174
|||||||||| |||||| || |||||||||| |||| ||||||||| | |||||||| ||
Sbjct 120 ACCCTCCGGCACCGGAACTT-TCTCTTTCTTCTATCACTTTCCTTT-GACTGTCTCTATC 177
Query 175 GAGA-TTCAATCACCGAACCGATTGAATCTTACGCAATGATGGGCGAAGAAGCAGCTCCG 233
|||| ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 178 GAGATTTCAATCACTGAATCGATTGAATCTTAAGCAATGATGGGCCAAGAAGCAGCTCCG 237
Query 234 ACGGGACCTCCCAACAGAGAACTCTACGCGCTCCTGAATTTGTCACCGGAAGCCTCCGAC 293
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 238 ACGGGACCACCCAACAGAGAACTCTACGCGCTCCTGAATTTATCACCGGAGGCCTCCGAC 297
Query 294 GAAGAAATCAGAAAAGCTTATCGTCAATGGGCTCAAGTTTATCACCCTGACAAGATACAA 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 GAAGAAATCAGAAAAGCTTATCGTCAATGGGCTCAAGTTTATCACCCTGACAAGATCCAA 357
Query 354 TCTCCTCAGATGAAGGAAGTGGCTACTGAGAACTTCCAACGAATATGTGAAGCATATGAG 413
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||
Sbjct 358 TCTCCTCAGATGAAGGAAGTAGCTACGGAGAATTTCCAACGGATATGTGAAGCATATGAG 417
Query 414 ATATTGTCGGATGAGACTAAGAGGCTAATATATGACTTATATGGCATGGAAGGCTTGACT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 418 ATATTGTCGGATGAGACTAAGAGGCTAATATATGACTTATATGGCATGGAAGGATTGAAT 477
Query 474 TCAGGATTAGAGCTTGGTCCTAGGCTGAGTAAGCCCGATGAGATCAAAGAGGAGCTTGAA 533
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 478 TCAGGATTAGAGCTTGGTCCTAGGTTGAGTAAGGCTGATGAGATCAAAGAGGAGCTTGAA 537
Query 534 AGGATTAAGAGGAGAAATGAAGAAGCTAAGAAGATGGCACATTTTCAACCCACTGGTTCT 593
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 AGGATTAAGAGGAGAAATGAAGAAGCTAAGAAGATGGCTCATTTTCAACCCACTGGTTCT 597
Query 594 ATTCTCTTCAATTTGTCTGTCCCAGATTTTTTAGGCGGCGATGGCATCATGAGAGGAATG 653
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 598 ATTCTCTTCAATTTGTCTGTCCCACATTTTTTAGTAGGCGATGGCATCATGAGAGGAATG 657
Query 654 GTTATGGCTAGTCAAGTGCAGTCTCAGTTGTCAAAAGATGATGCAATTGCTATTGGTGGA 713
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GTTATGGCTAGTCAAGTGCAGTCTCAGTTGTCAAAAGATGATGCAATTGCCATTGGTGGA 717
Query 714 AATTTGGCTGCCAATGAAAAGTCTGGTGGTGGAATTGCTACTGCCATTCTGAGACGACAG 773
|||||||| |||||||||||||||||||| ||| | ||||||||||| |||||||| |||
Sbjct 718 AATTTGGCGGCCAATGAAAAGTCTGGTGGCGGAGTCGCTACTGCCATACTGAGACGTCAG 777
Query 774 ATTTCTCCAGTGTCATCCATAGAGTTTGTCGCTTCAACAGGG-TTGCAGTCGCTTATTGG 832
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 778 ATTTCTCCAGTGTCATCCATAGAGTTTGTCGCTTCAAC-GGGTTTGCAGTCGCTTATTGG 836
Query 833 AATGCAGACAACACGTCAGTTAACCATACATTCAACTGCCACAATCAATATTTCGAAGTC 892
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 AGTGCAGACAACACGTCAGTTAACCATACATTCAACTGCCACAATCAATATTTCAAAGTC 896
Query 893 TTTGAGTGATGGTTCCATCAATCTTACCAACACGTGGACTCGACAGCTTTCAGAAACTTC 952
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTTGAGTGATGGCTCCATCAATCTTACCAACACGTGGACTCGACAGCTTTCAGAAACTTC 956
Query 953 AAGCGGAAATATTGAACTGGCACTGGGTATGCGGTCAGCAATTACAGTTGGATGGAAAAA 1012
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 AAGCGGAAATATTGAACTGGCACTGGGTATGCGATCAGCAATTACAGTTGGATGGAAAAA 1016
Query 1013 GAGAGACGAGAATGTATCTGCTGCTGGTGACTTTAAGATTGAATCTGGTGCACTCGGAGC 1072
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 GAGAGACGAGAATGTATCTGCTGCTGGTGACTTTAAGATTGAATCTGGTGGACTCGGAGC 1076
Query 1073 ATCAGCTCGTTATACTCGTAAACTTTCATCCAAATCTCACGGTCGTATTGTAGGTAGAAT 1132
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1077 ATCAGCTCGTTATACTCGTAAACTTTCATCCAAATCTCATGGTCGCATTGTGGGTAGAAT 1136
Query 1133 CGGAAGCAATGCTCTTGAGATTGAGGTCGGTGGTGGAAGG-AAGATTTCTGAGTTCAGTA 1191
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1137 CGGAAGCAATGCTCTTGAGATTGAGCTCGGTGGTGGAAGGCAA-ATTTCTGAGTTCAGTA 1195
Query 1192 CCGTAAGAATGATGTATACAATTGGAATCAAGGGTATTTTTTGGAAACTAGAGCTACACC 1251
| |||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||
Sbjct 1196 CAGTAAGAATGATGTATACAGTAGGACTCAAGGGTATTTTCTGGAAAGTAGAGCTACACC 1255
Query 1252 GTGGTAGCCAAAAGCTGATTGTTCCCATTCTGCTCTCCTCACATTTAGCTCCAGTATTTG 1311
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1256 GTGGTAGCCAAAAGCTGATTGTTCCCATTCTACTCTCCGCACATTTAGCTCCAGTATTTG 1315
Query 1312 CAACTGGAGCATTCATTGTTCCAACATCTCTTTACTTTTTGTTAAAGAAATTTGTGGTGA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CAACTGGAGCATTCATTGTTCCAACATCTCTTTACTTTTTGTTAAAGAAATTTGTGGTGA 1375
Query 1372 AGCCATATTTGCGTAAAAGAGAAAAACAAAAGGCCTTGGAGAATATGGAGAAAACTTGGG 1431
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AGCCATATTTGCTTAAAAGAGAAAAACAAAAGGCCTTGGAGAATATGGAGAAAACTTGGG 1435
Query 1432 GCCAGGTTGGGGAAGCAAGGACAAGGGCTGAGAAAGCCCAGCAATTGCTACAAACCGTAG 1491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GCCAGGTTGGGGAAGCAAGGGCAAGGGCTGAGAAAGCCCAGCAATTGCTACAAACCGTAG 1495
Query 1492 CCACAAGGAAGAGAAACCGGCAAGTTGAAACAGATGGGCTCATAGTAACGAAAGCGTTGT 1551
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CCACAAGGAAGAAAAACCGTCAAGTTGAAACAGATGGGCTCATAGTAACGAAAGCGTTGT 1555
Query 1552 ATGGTGACCCAAAAGCGATAGAGAGAAGAGACGAAGGAGTGGAAGGAGTGGATTCGGGAG 1611
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1556 ATGGTGACCCAAAAGCAATAGAGAGAAGAAACGAAGGAGTGGAAGGACTGGATTCGGGAG 1615
Query 1612 TCATTGACGTGACAGTGCCGATGAACTTCCTTGTGAGTGACTCAGGGCAGCTCAAGCTCC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TCATTGACGTGACAGTGCCGATGAACTTCCTTGTGAGTGACTCAGGGCAGCTCAAGCTCC 1675
Query 1672 ATGAGGGAGTGAAGAAATCAGGGATCATGGGCTTTTGCGATCCCTGTCCCGGCCAACCTA 1731
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1676 ATGAGGGAGTGAAGAAATCAGGGATCATGGGTTTTTGCGATCCCTGTCCCGGCCAACCTA 1735
Query 1732 AACAGTTATACATTGCCTATACTTACCATTCTCAAACGTTGGAGGTAACAGTTGGTGATT 1791
| |||||||||||||| || |||||||||||||| | || ||||||| ||||||||| |
Sbjct 1736 AGCAGTTATACATTGCATACACTTACCATTCTCAGCCATTTGAGGTAATAGTTGGTGACT 1795
Query 1792 ATGAAGAGGTGAGTATACCACAAGAAGGCCAGTGAGAGTATGAAAACGTTACTCTCCACT 1851
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1796 ATGAAGAGCTGAGTATACCACAAGAAGGCCAGTGAGAGTATGAAAACGGTACTCTCCACT 1855
Query 1852 TTGTTGTTTTTAATTAATACGAACGAATGGCTTCTTTTGGGCATTTGTAACACTTACCTA 1911
|||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct 1856 TTGTTGTTTTTA-TTAATACGAACGAATGGCTTCTTTCGGGGATTTGTAACTCTTT--TA 1912
Query 1912 TACATTCATTTCTTTCTCAATAAATTAAGCATTCTTGTTTGCCATAAATTTTGGGTAATC 1971
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 1913 CACATTCATTTCTTTCTCAATAAATTAAGCATTCTTGTTTGCCAAAAAATTTATGTAATC 1972
Query 1972 GTG 1974
|||
Sbjct 1973 GTG 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5