BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482542
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35730.1 | Symbols: | Heavy metal transport/detoxification ... 617 2e-176
> AT2G35730.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr2:15020492-15021556 REVERSE LENGTH=496
Length=496
Score = 617 bits (334), Expect = 2e-176
Identities = 397/426 (93%), Gaps = 10/426 (2%)
Strand=Plus/Plus
Query 1 TAGATACGTAAACTATATTTATACAT-ACATTTATATCAAACCCGCCGGCTTGGCTCTGC 59
||||||| ||||| |||||||||||| ||||||| | ||||| |||||||||||||||||
Sbjct 10 TAGATACATAAACAATATTTATACATAACATTTACAGCAAACTCGCCGGCTTGGCTCTGC 69
Query 60 CGTCACACGGCAATGAAGGAGCCAATGATGCGGCGGCGCACACTCATGATCTGCGAGAAA 119
||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 70 CGTGTGACGGCAATGAAGGAGCCAATGATGCGAAGGCGCACCCTCATGCTCTGCGAGAAA 129
Query 120 CTCTCACTTCCGTCGTTTCAAGTGATAGAGATAAACGCAGATGTGGGATGTGTTTG-TTG 178
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 130 CTCTCACTTCCATCGTTTCAAGTGATAGAGATAAACGCAGATGTGGGATGTG-TTGCTTG 188
Query 179 TCAAGACAGAGTCTC-AAGGATTGTCTCCAAGATGACCGGAATCGAAGAGTACGTGGTTG 237
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCAAGACAGAGTCTCTAA-GATTGTCTCCAAGATGACCGGAATCGAAGAGTACGTGGTTG 247
Query 238 ATTTGAAGAAGAAGCTGGTCATGGCACGAGGTGACTTTAGGCCACGTTTGGTTTCTTCTC 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATTTGAAGAAGAAGTTGGTCATGGCACGAGGTGACTTTAGGCCACGTTTGGTTTCTTCTC 307
Query 298 ATCAACAACAAGTCAAGGATGTTGTCTCTCAAACTCCTTCTCAAAATGCCAAACGCCTTT 357
| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 308 A--A-CAACAAGTCAAGGACGTTGTCTCTCAAACTCCTTCTCAAAACGCCAAACGCCTTT 364
Query 358 TGCGACCTCTAAATCTATTCCTTCGTTCCATTTTCTGTCTTTGTTTACGTCCA-CGTACA 416
||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 365 TGCGACCTCTAAAAATATTCCTTCGTTCCATTTTCTCTCTTTGTTTACGTCCAAC-TACA 423
Query 417 TTATAA 422
||||||
Sbjct 424 TTATAA 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20006564102
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5