BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482547
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35760.1 | Symbols: | Uncharacterised protein family (UPF04... 1240 0.0
> AT2G35760.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:15031923-15033307 FORWARD LENGTH=955
Length=955
Score = 1240 bits (671), Expect = 0.0
Identities = 844/925 (91%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 1 GTAGCAATACACTCTAAAAGCAACAAAGAAGCCAAAGCCAAGCCAACTAACAACAAATCA 60
||||||| |||||||||||||||||||| | | |||| | ||| ||||||||||||
Sbjct 1 GTAGCAACACACTCTAAAAGCAACAAAG--G----ATCCAA-CTAACAAACAACAAATCA 53
Query 61 ACGTTTTTGTTTCTATCTACAGTCTCTCTGAAAATCTCACAAAGTTTCCATATACTTTTA 120
||||||||||||||| ||||||||||||||||||||||||||||| | || |||||
Sbjct 54 GTGTTTTTGTTTCTATCAACAGTCTCTCTGAAAATCTCACAAAGTTTTC--AT-CTTTT- 109
Query 121 AATAAGAACTCAAATTTAGGGACAAAGATGAGTTATTTGGGAGTCGGAGTTAGTCCCGGA 180
|||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 110 AATAAGAAATCAAGTTTACGGACAGAGATGAGTTATTTGGGAGTCGGAGTTAGTCCCGGA 169
Query 181 AACGTCACCGGAAGTAGTACTAAAATGAAGCTGATTGATCGGAAAGTGAGAGTGACAGAG 240
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || |||
Sbjct 170 AACGTCTCCGGAAGTACTACCAAAATGAAGCTGATTGATCGGAAAGTGAGAGTCACGGAG 229
Query 241 TTGATTCTGAGGTGTTTGGTTTGTG-CCTTCGCTCTCGTCGCTGCGGTTCTCGTTGCTAC 299
||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||
Sbjct 230 TTGATTCTGAGGTGTTTGGTTTGTGTCCTT-GCTCTCGTCGCTGCGATTCTCATTGCTAC 288
Query 300 AGATGTTCAAGTAAGAGAGATATTCACGATTCAGAAGAAAGCTAAATTCACCGACATGAA 359
|||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 289 AGATGTTCAAGTGAGAGAGATTTTCATGATTCAGAAGAAAGCCAAATTCACCGACATGAA 348
Query 360 GGCACTTGTGTTTTTGGTGGTCATCAATGGCATAGCCGCGGGTTATTCTTTGGTTCAGGC 419
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 GGCGCTTGTGCTTTTGGTGGTCGTCAATGGCATAGCCGCGGGTTATTCTTTGGTTCAGGC 408
Query 420 GGTTTGTTGCTTGGTGGGTTTGGTGAAAGGAAGCGTTTTGCTCAGTGAGCCACTGGCTTG 479
|||| ||||| ||||||||||| |||||||||| |||||| | ||| |||| ||||||||
Sbjct 409 GGTTCGTTGCGTGGTGGGTTTGATGAAAGGAAGAGTTTTGTTTAGTAAGCCTCTGGCTTG 468
Query 480 GGCCATTTTCTTC-GCTGATCAGGCGGTAGCATACTTGTGTGTGGCGGGTGTTGCAGCAG 538
||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 469 GGCCATTTTCTTCGGC-GATCAGGCAGTAGCATACTTGTGTGTGGCGGGGGTTGCAGCCG 527
Query 539 CGGCGCAGTCTGCGGCCTTTGCAAAGCTGGGTCAGCCAGAGCTTCAGTGGATGAAGATTT 598
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 528 CGGCGCAGTCTGCGGCCTTTGCAAAGTTGGGTGAGCCAGAGCTTCAATGGATGAAAATTT 587
Query 599 GTGATATGTATGGGAAGTTCTGTAACCAAGTGGGTGAAGGAATTGCGAGCGCTTTGTTTG 658
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTAATATGTATGGGAAGTTTTGTAACCAAGTGGGTGAAGGAATTGCGAGCGCTTTGTTTG 647
Query 659 CTTGCATTGGAATGGTTTTGATCTCTTGCATTTCGGCTTTCGGTGTTTTTCGTTTGTATG 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 648 CTTGCATTGGAATGGTTTTGATCTCTTGCATTTCGGCTTTCGGTGTCTTTCGTTTGTACG 707
Query 719 GTGGAT-CAAAACCTCGGCAAAGCTCACGGTGGTGAAGGCCTATACTGGTCTTGGACCAA 777
| ||| |||| | | ||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 708 GCGGAAGCAAATC-TAGGCCAAGCTCACGGTGGTGAAGGCCTGTAGTGGTCTTGGACCAA 766
Query 778 CCTTGTTTGTGGAACCTCTGTTAAATGTCGTGGTGTGTTGTTCTCT-ATCTCTCAGTGTG 836
||||||||||||||||||| |||||||| ||||||||| || |||| |||||||||||||
Sbjct 767 CCTTGTTTGTGGAACCTCTATTAAATGTTGTGGTGTGT-GTCCTCTTATCTCTCAGTGTG 825
Query 837 TATACCGTCTATTACT-ACTGTCATGATCTCAGCTGCTCTAGAAATGTAATCATGACAAT 895
||||||| |||||||| ||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 826 TATACCG-CTATTACTTACTGTCATGATCTCAGCTGATCTATAAACATAATCATGACAAT 884
Query 896 TATGGTTGTTTAATGTGAATAATTA 920
||||||||||| |||||||||||||
Sbjct 885 TATGGTTGTTTGATGTGAATAATTA 909
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 920 AAACCACAAACAATGACATGTTTAGTCT 947
||||||||||||||||||||||||||||
Sbjct 927 AAACCACAAACAATGACATGTTTAGTCT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5