BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482548

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35765.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   604    1e-172


> AT2G35765.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G19500.1); Has 9 Blast hits to 9 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:15033595-15034091 FORWARD LENGTH=397
Length=397

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 374/397 (94%), Gaps = 2/397 (1%)
 Strand=Plus/Plus

Query  1    AAATAGAAGAAGGAAGAATCTACGTTAACGGACCGGATCATGGAGAAGAAGGTGGCTTTG  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    AAATAGAAGAAGGAAGAATCTACGTTAACGGACAGGATCATGGAGAAGAAGGTGGCTTTG  60

Query  61   GTGATGGCTTTGATGTTGCTTATGTCGGTGTTGATTTCCGCCGAGGAAGCACCAACGATC  120
            |||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||| |||
Sbjct  61   GTGATGGCTTTGATGTTGCTTATGTCCGTGTTGGTTTCTGCCGAGGAAACACCAACCATC  120

Query  121  GGACAGAGGATAGACTCAGCCACAACCGACTTTACCAAATTCTTCAATGAACATGCCCGT  180
            ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  121  GGACAGAGGATAGACTCAGCCGCAACCGACTTTACCAAATTCTTCGATGAACATGCCCGT  180

Query  181  CCTGCCGTGGACTCTGTCTCCTCTACCGTCAAATCCGTCTACAACTGGTTTGGTGATAAA  240
            |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  181  CCTGTCGTGGACTCCGTCTCCTCTACCGTCAAATCCGTCTACCACTGGTTTGGTGATAAA  240

Query  241  GCTAAGGAATGGGGACTCTAGAGATTTGTTTATGAGCGAAGAGGTTTGGAAAGCATTTTC  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  241  GCTAAGGAATGGGGACTCTAGAGATTTGTTTATGAGCGAAGAGGTTTGGAAAACATTTTC  300

Query  301  AGCGAATAAAGTTTGATCTCCATGTATTACGTTATTTTTAATTAATAT-ATAAGAAAAT-  358
            ||| ||| |||||||||||||||||| ||| ||||||||||||||||| | |||||||  
Sbjct  301  AGCCAATCAAGTTTGATCTCCATGTACTACTTTATTTTTAATTAATATTAAAAGAAAAAG  360

Query  359  ATCTATATTTGTCTTCTAATAAGCAACAACTACACAC  395
            || |||||||||||||||||| | |||||||||||||
Sbjct  361  ATGTATATTTGTCTTCTAATACGTAACAACTACACAC  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18649334879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5