BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482550
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35780.1 | Symbols: scpl26 | serine carboxypeptidase-like 26... 2209 0.0
AT4G30810.1 | Symbols: scpl29 | serine carboxypeptidase-like 29... 121 2e-26
> AT2G35780.1 | Symbols: scpl26 | serine carboxypeptidase-like
26 | chr2:15037662-15040127 REVERSE LENGTH=1453
Length=1453
Score = 2209 bits (1196), Expect = 0.0
Identities = 1343/1412 (95%), Gaps = 18/1412 (1%)
Strand=Plus/Plus
Query 20 TCTTCTTCTTCCTCATTCTACTCCCTTGCACATT-TTGTTCCAGACACGAACAAGAAAAG 78
||||||||||||| |||||||||| || | | || ||||||||||||||||||||||||
Sbjct 46 TCTTCTTCTTCCTTATTCTACTCCATTACGC-TTCTTGTTCCAGACACGAACAAGAAAAA 104
Query 79 GACCGAATCTCACACCTTCCCGGTGAACCAAACGATGTTTCCTTCTCTCACTTCTCTGGT 138
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 105 GACCGAATCTTTCACCTTCCCGGTGAACCAAACGATGTCTCCTTCTCTCACTTCTCTGGT 164
Query 139 TACATTACCGTCAACGAGTCAGCTGGAAGAGCACTCTTCTACTGGCTCACTGAGTCACCA 198
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 165 TACATTACCGTCAACGAGTCAGCAGGAAGAGCACTATTCTACTGGCTCACTGAGTCACCA 224
Query 199 CCGAGTCAAAACCCTGAGTCTAAGCCTCTTGTTCTCTGGCTCAACGGTGGTCCTGGTTGT 258
|||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 225 CCGAGTGAAAACCCTGAGTCTAAGCCTCTTGTCCTCTGGCTCAACGGTGGACCTGGTTGT 284
Query 259 TCCTCCGTAGCTTACGGCGCCGCTGAAGAAATCGGACCTTTTAGAATCAATCCTGATGGC 318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 TCCTCCGTAGCTTACGGTGCCGCTGAAGAAATCGGACCTTTTAGAATCAATCCTGATGGC 344
Query 319 AAAACTCTTTACCACAATCCTTACTCTTGGAACAAATTGGCGAATTTGCTGTTTCTTGAA 378
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 345 AAAACTCTTTACCACAATCCTTACTCTTGGAACAAATTGGCGAATTTGCTCTTCCTTGAA 404
Query 379 TCTCCAGCTGGTGTTGGTTTCTCGTATTCGAATACCACTTCCGATTTGTACACTGCCGGA 438
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 405 TCTCCTGCTGGTGTTGGTTTCTCGTATTCGAATACTACCTCCGATTTGTATACTGCCGGA 464
Query 439 GA-CAAGAGAACTGCTGAAGATGCGTATGTGTTTCTTGTGAAATGGTTTGAGAGGTTTCC 497
|| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 465 GATCA-GAGAACTGCGGAAGATGCTTATGTGTTTCTTGTGAAATGGTTTGAGAGGTTTCC 523
Query 498 TCAATACAAGCACAGAGAGTTCTACATTGCTGGAGAAAGCTATGCAGGTCATTATGTTCC 557
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 TCAATACAAACACAGAGAGTTCTACATTGCTGGAGAAAGCTATGCAGGTCATTATGTTCC 583
Query 558 TCAGTTGTCGCAAATTGTTTATGAGAAACGCAATCCAGTTATCAACTTCAAAGGCTTCAT 617
||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 584 TCAGTTGTCACAGATTGTTTATGAGAAACGCAATCCAGCTATCAACTTTAAAGGCTTCAT 643
Query 618 TGTGGGGAATGCTGTGATTGATGACTACCATGATTACGTGGGTTTATTTGAATATTGGTG 677
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TGTTGGGAATGCTGTGATTGATGACTACCATGATTACGTGGGTTTATTTGAATATTGGTG 703
Query 678 GACTCATGGTTTGATATCTGATCTCACTTACCACAACTTACGGATCACTTGTGAATTTGG 737
| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 704 GGCTCATGGGTTGATATCTGATCTCACTTACCACAACTTACGGATCACGTGTGAATTTGG 763
Query 738 ATCATCCGAGCACCCGTCCCCTGAATGCAGCAAGGCCATGGAAGCTGCAGACTTGGAGCA 797
||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 764 ATCATCCGAGCACCCGTCCTCTAAATGCACCAAGGCCATGGAAGCTGCAGACTTGGAGCA 823
Query 798 AGGCAATATTGATCCATATAGCATTTACACTGTGACTTGTAAGAAGGAGGCTGCAGCTCT 857
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 824 AGGCAATATTGATCCTTATAGCATTTACACTGTCACTTGTAAAAAGGAGGCTGCAGCTCT 883
Query 858 TAGGTCTCGCTTCTCGAGGGTTCGTCATCCATGGATGTGGAGAGCATATGACCCTTGCAC 917
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 884 TAGGTCTCGCTTCTCGAGAGTTCGTCATCCATGGATGTGGAGAGCCTATGACCCTTGCAC 943
Query 918 AGATAGATACTCAGGCATGTATTTCAATTCTCCGGAGGTTCAAAAGGCTATGCATGCTAA 977
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AGAGAAATACTCCGGCATGTATTTCAATTCTCCGGAGGTTCAAAAGGCTATGCATGCTAA 1003
Query 978 TATAACAGGACTTGCTTATCCATGGAAAGGGTGCAGTGACATCGTTGGAGAGAAATGGGC 1037
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TATAACAGGACTAGCTTATCCATGGAAAGGGTGCAGTGACATCGTTGGAGAGAAATGGGC 1063
Query 1038 AGATTCTCCTCTATCTATGCTTCCAATCTACAAGGAACTCATCGCTGCAGGTGTCAGGAT 1097
|||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 1064 AGATTCTCCTCTGTCTATGCTTCCAATCTACAAAGAACTCATCGCCGCAGGTCTCAGGAT 1123
Query 1098 ATGGGTTTTCAGCGGAGACACTGATTCAGTGGTTCCCATTACTGGAACACGATACTCCAT 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ATGGGTTTTCAGCGGAGACACTGATTCAGTGGTTCCCATTACTGGAACACGATACTCCAT 1183
Query 1158 TAGAGCCCTCAAGTTACAACCAGTCTCCAAATGGTACCCTTGGAACGACGATGGACAGGT 1217
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1184 TAGAGCCCTCAAGTTACAACCACTCTCCAAATGGTACCCTTGGAACGATGATGGACAGGT 1243
Query 1218 TGGTGGATGGAGCCAAGTTTACAAAGGGCTGACTCTGGTGACAATACATGGAGCAGGACA 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TGGTGGATGGAGCCAAGTTTACAAAGGGCTGACTCTGGTGACAATACATGGAGCAGGACA 1303
Query 1278 TGAGGTACCTCTTCACCGCCCTCGTCGAGCTTTTCTTCTTTTTCAGTCGTTTCTCGACAA 1337
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TGAGGTACCTCTTTTCCGCCCTCGTCGAGCTTTTCTTCTTTTTCAGTCGTTTCTCGACAA 1363
Query 1338 CAAGCCATTGCCAATGTAAATTG-A------T---AT--GACCAGAGTTTCTTTATAAAT 1385
||||||||||||||||||||||| | | || ||||||||||| ||||||| |
Sbjct 1364 CAAGCCATTGCCAATGTAAATTGTAAGACACTGTGATAAGACCAGAGTTT-TTTATAA-T 1421
Query 1386 AAGAAGTAAGAATCTCTTTTTCACATTCTCAG 1417
||||||||||||||||||||||||||||||||
Sbjct 1422 AAGAAGTAAGAATCTCTTTTTCACATTCTCAG 1453
> AT4G30810.1 | Symbols: scpl29 | serine carboxypeptidase-like
29 | chr4:15003451-15006212 FORWARD LENGTH=1658
Length=1658
Score = 121 bits (65), Expect = 2e-26
Identities = 263/357 (74%), Gaps = 20/357 (6%)
Strand=Plus/Plus
Query 215 AGTCTAAGCCTCTTGTTCTCTGGCTCAACGGTGGTCCTGGTTGTTCCTCCGTAGCTTACG 274
|||||||||||||||||||||||||||| || || || || ||||| || || || || |
Sbjct 259 AGTCTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATATG 318
Query 275 GCGCCGCTGAAGAAATCGGACCTTTT-AGAATCAATCCTGATGGCAAAACTCTTTACCAC 333
| | || ||||| || ||||| ||| | | | || | ||||| || ||||||||||
Sbjct 319 GTGAAGCAGAAGAGATAGGACCATTTCACATT-AAGGCAGATGGGAAGACTCTTTACCTT 377
Query 334 AATCCTTACTCTTGGAACAAAT-TGGCGAAT-TTGCTGTTTCTTGAAT-CTCCAGCTGGT 390
|||| || ||||||||| || || | ||| || |||| ||||| | | || | |||
Sbjct 378 AATCAATATTCTTGGAACCAAGCTG-CAAATATTT-TGTTCCTTGA-TGCACCTGTTGGA 434
Query 391 GTTGGTT-TCTCGTATTCGAATACCACTTCCGATTTGTACA-CTGCCGGAGACAAGAGAA 448
||||||| | || || || || ||| | || |||||| | | | || || || ||||
Sbjct 435 GTTGGTTAT-TCATACTCAAACACCTCGTCTGATTTGAAGAGCAAT-GGTGATAAAAGAA 492
Query 449 CTGCTGAAGATGCGTATGTG-TTTCTTG-TGAAATGGTTTGAGAGGTTTCCTCAATACAA 506
|||| |||||| | || ||||| | |||||||| ||||| ||||||| |||||||
Sbjct 493 CTGCCGAAGATTCAC-TGAAATTTCT-GCTGAAATGGGTTGAGCGGTTTCCGGAATACAA 550
Query 507 -GCACAGAGAGTTCTACATTGCT-GGAGAAAGCTATGCAGGTCATTATGTTCCTCAG 561
| | || || || || || | | || || ||||||||||| ||||| ||||||||
Sbjct 551 AGGA-AGGGACTTTTATATAG-TAGGGGAGAGCTATGCAGGACATTACATTCCTCAG 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5