BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482552
Length=2954
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35800.1 | Symbols: | mitochondrial substrate carrier famil... 4481 0.0
> AT2G35800.1 | Symbols: | mitochondrial substrate carrier family
protein | chr2:15044045-15048603 FORWARD LENGTH=3115
Length=3115
Score = 4481 bits (2426), Expect = 0.0
Identities = 2836/3020 (94%), Gaps = 84/3020 (3%)
Strand=Plus/Plus
Query 1 AGGGTCATCATCATTTCATGGTTAcctcctcctcctctcttcttactctcaccatatctg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6 AGGGTCATCATCATTTCATGGTTACCTCCTCTTCCTCTCTTCTTACTCTCACCATATCTG 65
Query 61 ------ctctctctctGTTTCAAGCTTTTGCTCCCATTGCTTCTTCATTTCATTTCCTTC 114
|||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 66 CTCTCTCTCTCTCTCTGTTTCAAGCTTTTGCTCCCA-------TT--TTTCATTTCCTTC 116
Query 115 GTATTCTCGCTCGAGCTTAACGGTTGATATCCCAATGGCCAAATCGGTATCTGAATCGCC 174
||||||||||||||||||| |||||||| | |||||| |||||||| ||| |||||||||
Sbjct 117 GTATTCTCGCTCGAGCTTAGCGGTTGATGTACCAATGACCAAATCGATATTTGAATCGCC 176
Query 175 GT--C--Gc-ttc-----ctt-t--ctt-t-t-tct-t--c-tgatt-t----cttttag 209
|| | | ||| ||| | || | | ||| | | ||||| | |||||||
Sbjct 177 GTGGCTACCTTTCTTTTTCTTCTGATTTCTCTATCTCTCGCTTGATTCTACCACTTTTAG 236
Query 210 ggtttctttttttcccacggactttgggtttctttAAGAAGTTGGATTAG--TGCGTTTT 267
||||||| || |||||| ||||||||||||||||||||||||| |||| | | ||||||
Sbjct 237 GGTTTCTATTATTCCCAGGGACTTTGGGTTTCTTTAAGAAGTTCGATTCGTCTCCGTTTT 296
Query 268 GTTTTTAGGG-T-------TC-GT-GTGTTGGA-TTCGATC----TTTCTTTGGTATCTT 312
||||||||| | || || |||||||| ||||||| ||| |||||||||||
Sbjct 297 CTTTTTAGGGTTAACGAAGTCTGTGGTGTTGGATTTCGATCTTTTTTTTTTTGGTATCTT 356
Query 313 --CCATTGAATGTTGCGGTGATAAGAGTGACGACTACAATGGTGTCTAAGAATGATCATA 370
||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 357 CCCCATTGACTGTTGCGGTGATAAGAGAG-TGAC-GCAATGGTGTCTAAGAATGATCATA 414
Query 371 TCGAGACTTTCTTCAATTCAATCCAAGTAGTTAAAGA---TGTTCTTCTTCCGATTGAGC 427
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 415 TCGAGACTTTATTCAATTCAATCCAACTAGTTAAAGATGTTGTTCTTCTTCCGATTGAGC 474
Query 428 TCGGTGTGAAAAAGGCGGCAAGAGACATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 487
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 475 TTGGTGTGAAAAAGGCGGCAAGAGATATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 534
Query 488 TAGGTCTTGTTTTGAGATCATCTGGAAGAAATAGGAAGAAGCGGATTTG-TGCTAGTCCT 546
||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||| ||||
Sbjct 535 TAGGTCTTGTTTTCAGATCATCTGGAAGAAACAGGAAGAAGCGGA-TTGTTGCTACTCCT 593
Query 547 GAATTTGACGACAATGCTACTAATAATGTTCA--GTGT-GTGGTAAGTGATGAGAGAAAG 603
|||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct 594 GAATTTGACGACAATGCTACTAATAATGTTCAGTGTGTGGTGGTTACTGATGAGAGAAAG 653
Query 604 AAAGGTTTGTCTATC---AAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCGAAT 660
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 AAAGGTTTGTCTATCAAGAAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCCAAT 713
Query 661 TTAG-CGAGTGACAAGTTGAGTCGTAGAAATGAGGTGGTGGTGGTGAAGAAAGATAAGTC 719
|||| | ||||| |||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 714 TTAGTC-AGTGAGAAGTTGAGTCGTGGAAATGATGTGGTGGTGGCGAAGAAAGATAAGTC 772
Query 720 TTT-G-G-AGAAAGACGATGATTCTTGTACCAATTGCTTCAAGTTTGCGATGACTTGGTC 776
||| | | ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 773 TTTGGAGAAGAAAGATGATGATTCTTGTACTGATTGCTTCAAGTTTGCGATGACTTGGTC 832
Query 777 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAGATAGGTAAAAAGAG 836
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 833 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAAATTGGTAAGAAGAG 892
Query 837 GATTCACAAAATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 896
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GATTCATAAGATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 952
Query 897 GGCATTTGTAAATCGGAAAGAAGTGAGGCGTCAGTCAGTTGAATCTGCAGAAAAGGAAGG 956
||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 953 GGCATTTGTGAGTCGGAAAGAAGTGAGGTGTCAGTCAGTTGAATCTGTAGAAAAGGAAGG 1012
Query 957 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1072
Query 1017 CCAGAAGCTGGACCAATTCATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1076
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CCAGAAGCTGGACCAGTTTATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1132
Query 1077 AGCTAGTCCTAATGATGGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTTGACGT 1136
||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1133 AGCTAGTTCTAATGATAGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTCGACGT 1192
Query 1137 AAATGGATTCCTTGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1196
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAATGGATTCCTCGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1252
Query 1197 TGGCCTGACATCTCACGTAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTACTGGTAA 1256
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1253 TGGCCTGACATCTCACATAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTGCTGGTAA 1312
Query 1257 GGAGGAAAGTGCAGTTGATTCTCCACAGAACCTGGCAACTGGACTACTGAGTATACCTTT 1316
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 1313 GGAGGAAAGTGCAGTTGATTCTCCGCAGAACTTGGCAACTGGACTATTGAGTATACCTTT 1372
Query 1317 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACGATTTCACTGACGGAACTTATTGA 1376
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1373 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACAATTTCACTGACGGAACTTATTGA 1432
Query 1377 GCTTTTACCACAATTAGGACGGCCATCAAGAGACCATCCAGACAAGAAAAAACTGATTTC 1436
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1433 ACTTTTACCACAATTAGGACGACCTTCAAGAGACCATCCAGACAAGAAAAAACTAATTTC 1492
Query 1437 TGTTCAGGATTTTTTCAGATACACAGAGTCTGAAGGCAGGAGGTTCTTTGAAGAGTTAGA 1496
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1493 TGTTCAGGATTTTTTCAGATACACCGAGTCTGAAGGCAGGAGGTTCTTTGAAGAATTAGA 1552
Query 1497 TAGAGATGGTGATGGCAAAGTAACTTTGGAAGATCTGGAAATTGCAATGAGGAGAAGAAA 1556
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1553 TAGAGATGGTGATGGCAAAGTAACTTTGGAGGATCTGGAAATTGCAATGAGGAGAAGAAA 1612
Query 1557 GTTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGAAGTCATCTTTTCTCGAA 1616
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1613 ATTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGGAGTCATCTTTTCTCGAA 1672
Query 1617 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1732
Query 1677 TGCCTATACTTCTCTCTGTTTGACCAAGTCTGGTACTCTTCAGAAGAGTGAGATATTGGC 1736
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1733 TGCCTATACTTCTCTCTGCTTGACCAAGTCTGGTACTCTTAAGAAAAGTGAGATATTGGC 1792
Query 1737 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1852
Query 1797 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTGTT 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1853 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTTTT 1912
Query 1857 GCTGCCATATGAGCGGTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 GCTGCCATATGAGCGCTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1972
Query 1917 TGTTGCTGTTGCACCTCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 1976
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 TGTTGCTGTTGCACCCCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 2032
Query 1977 AGGAGGGCTTGCCTCTGCTCTCTCCACCTCCTTAATGCATCCGATTGACACAATCAAGAC 2036
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2033 GGGAGGGCTTGCCTCTGCTCTCTCCACTTCCTTAATGCATCCGATTGACACAATCAAGAC 2092
Query 2037 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCGAAGCTTCCAGAGATTGG 2096
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2093 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCCAAGCTTCCAGAGATTGG 2152
Query 2097 TGTGCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2156
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 TGTCCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2212
Query 2157 CCTGCGAACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2216
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CCTGCGGACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2272
Query 2217 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2332
Query 2277 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCCGGCATGTTTAATAATGTAGG 2336
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2333 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCTGGCATGTTTAACAATGTAGG 2392
Query 2337 GGAAGCCATTGTAGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2396
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 GGAAGCCATTGTCGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2452
Query 2397 CGCAACTCTTTGCCGTGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2456
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 CGCAACTCTTTGCCGCGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2512
Query 2457 CAAAAAGATGGTGGCGCAAGCGCTGGGAAGAGAACTCGAGGCATGGGAGACAATAGCAGT 2516
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 2513 CAAAAAGATGGTGGCGCAAGCTCTGGGAAGAGAACTGGAGGCATGGGAGACAATAGCGGT 2572
Query 2517 TGGGGCGGTGTCAGGAGGTATAGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2576
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2573 TGGGGCGGTGTCAGGAGGTATTGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2632
Query 2577 GAGAATGATGACTGCAACACCAGGGAGACCGATCTCAATGTCGATGGTTGTTGTCTCGAT 2636
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2633 GAGAATGATGACTGCAACGCCAGGGAGACCGATCTCAATGTCTATGGTTGTTGTATCGAT 2692
Query 2637 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2693 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2752
Query 2697 GGCTCCTCTAGGTGCTATGAACTTTGCTGGCTACGAACTAGCCAAGAAAGCTATGCAGAA 2756
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2753 GGCTCCTCTAGGTGCTATGAACTTTGCTGGGTACGAACTAGCCAAGAAAGCTATGCAGAA 2812
Query 2757 GAACGAGGATGCTGTGCTAGCAGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGCGATTT 2816
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2813 GAACGAAGATGCAGTGCTAGCGGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGGGATTT 2872
Query 2817 CACTTTGCTTTGCTTTGCTGCTACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCTC 2876
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2873 TACTTTGCTTTGCT--GCT---ACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCAC 2927
Query 2877 CTCTGTTGTTAAATGCTACTTTGCAAATTTTTGACaaaaaaaaaaG--TTCATTGTTTTG 2934
|||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 2928 CTCTTTTGTTAAAAGCTACTTTGCAAAATTTTGACAAAAAAAAAAGGGTTCATTGTTTTG 2987
Query 2935 TTGTGCATTGAGGACAGTTT 2954
||||||||||||||||||||
Sbjct 2988 TTGTGCATTGAGGACAGTTT 3007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146838642161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5