BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482556

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   339    1e-92


> AT2G35850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G52360.1); Has 
42 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15056753-15056995 
FORWARD LENGTH=243
Length=243

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 229/249 (92%), Gaps = 12/249 (5%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGTGTGGTGCTTCTT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGCGTGGTGCTTCTT  60

Query  61   GCGGCTCAGCTTCACAAGCGTCTCCTCTCTGATTATATGGACAAGCTCGAGCCTCAACAT  120
            || |||||||||||||||||||||||||||| ||| |||||||||||||| |||   |  
Sbjct  61   GCAGCTCAGCTTCACAAGCGTCTCCTCTCTGGTTACATGGACAAGCTCGAACCT---C--  115

Query  121  TCTAATAAGgaaagaaagaagacgaagaagaagaagGTGAGCTTTGCAGAAGATATGGTG  180
             ||| ||||||||||||||| |  ||||| ||||| ||||||||||||||||||||||||
Sbjct  116  -CTACTAAGGAAAGAAAGAA-A--AAGAAAAAGAAAGTGAGCTTTGCAGAAGATATGGTG  171

Query  181  GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATC--CAA-GTTGGAG  237
            |||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||
Sbjct  172  GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATCATCAAAGTTGGAG  231

Query  238  GATGAAAGA  246
            |||||||||
Sbjct  232  GATGAAAGA  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5