BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482558
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35880.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 2488 0.0
> AT2G35880.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr2:15062988-15065870 REVERSE LENGTH=1824
Length=1824
Score = 2488 bits (1347), Expect = 0.0
Identities = 1651/1793 (92%), Gaps = 40/1793 (2%)
Strand=Plus/Plus
Query 14 ACAGAGACTCGTCGCTCTTCGctttttcttctctctttcttt-t-ttAGCCAGTA--GTG 69
||| |||||||||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 41 ACA-AGACTCGTCGCTCTTCGCTTTTTCTTCTCTCTTTCTTTCTCTT-GCCAGTAGTGTG 98
Query 70 ATCTTACGAAGCTTTCTTTAGTAGAGAAAAAAGCATATACGCTTTGTTGTCTTTCTTAAT 129
|||||||||||| | |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 99 ATCTTACGAAGC--T-TTTAGTAGAG-AAAAAGCATATACGC--T-TTGTCTTTCTTAAT 151
Query 130 CCGACTGATAAGTCCTCAGGATCAGATGGAAC-AATGGGTGGCTCCTCAAAACAAGAAGG 188
||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 152 -CGACTGATAAGTCCTTAGGATCAGATGGAACAAATGGGTGGCTACTCAAAACAACAAGG 210
Query 189 TCCATCTTTAGTTTGATTGAGGGATTTGGATCTGACTGAACTGAATTCATCAACGTTGTC 248
||||| |||||||||||| |||||||||||||||| | || | ||||||||| |||||
Sbjct 211 TCCATTTTTAGTTTGATTAAGGGATTTGGATCTGA--G--CTTACTTCATCAACTTTGTC 266
Query 249 GG-ATATACATTTGCTTTGTGTGAATTTGG-ATTTCTTGCCCTGAATGGCGTCCGAGGAT 306
|| |||||||||||||||||||| |||||| | || | |||||||||||||||||||||
Sbjct 267 GGAATATACATTTGCTTTGTGTGGATTTGGAAGTT-GT-CCCTGAATGGCGTCCGAGGAT 324
Query 307 TTGAGTGTTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 366
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TTGAATATTGTTGCGGAATCAAAGAAAGGGGAAGAGAATGTTATTGTTGATAATTCCAAG 384
Query 367 GACATGACTAGACCTGAGAATCTTGACTTATCTACCGAGAAAGCTGATAATGTCAATGAG 426
||||||| ||||||||||||||||||||||||||| |||||| |||||| || |||||||
Sbjct 385 GACATGAATAGACCTGAGAATCTTGACTTATCTACTGAGAAAACTGATACTGCCAATGAG 444
Query 427 AATGTTCCAAAAGATGAAGCTTCTAAGCTGCCAAAGGAAGCAGACCTCCCTGAGTCTGGT 486
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 445 AATGGTCCAAAAGATGAAGCTTCTAAGCTGGTAAAGGAAGCAGACCTCCCTGAGTCTGGT 504
Query 487 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAGTAAACCTGTTAAGAGAAAGTCAGGGACC 546
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 505 ACTTCAGTGAAGAGTAAAACAGCTAAGGATAATAAACCTGTTAAGAGAAAGTCAGGGACG 564
Query 547 TTTTCTCGCAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACCAAAGGAGCTTAT 606
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 565 TTTTCTCGGAGCCCGAGATTCATGTCTCAGAGCTCTTCATTTCCAACTAAAGGAGCTTAT 624
Query 607 ACTGATATTACTAGAAAGAGTATTGATGCAACAACATCAAAGACTAGTCTTAAACCCGTC 666
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 625 ACTGATATTACTAGAAAGAGCATTGATGCCACAACATCAAAGACTAGTCTTAAACCCGTC 684
Query 667 GTTGCAGGTGGATCCAAACCAAAAGCCACTCCATCTT-ATAGCAGCGGTGTTTTCACTAA 725
||||| ||||||||||||||||||||||||||||||| | ||||||||||||| | | ||
Sbjct 685 GTTGCTGGTGGATCCAAACCAAAAGCCACTCCATCTTCA-AGCAGCGGTGTTTCCGCAAA 743
Query 726 GCGCACCGGTGTAGTATCTGCCCCCCTCAAAAAGCAAACTTTGCCGGTGAAACCCATTTC 785
||||||| || |||||||||| || ||||||||||||||| |||| |||||| |||||||
Sbjct 744 GCGCACCAGTTTAGTATCTGCGCCTCTCAAAAAGCAAACTATGCCTGTGAAAACCATTTC 803
Query 786 TAGGGATTCAGCGTCAGGCCCTACTTCCAAATTAGAAGATGAAGGTTCTAAACCCATTAA 845
|| |||| |||| |||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 804 TAAGGATGCAGCTTCAGGCCCTACTTCCAAATTAGGAGATGAAGGTTCTAAATCCATCAA 863
Query 846 AGAAGAAACGGCGGGGAAAGACATTGAGGAAACCAGTTCAACCACCGCTGTGGTGGCAGA 905
||||||||| |||||||| || | ||||| | | |||||||||||||||||||||||
Sbjct 864 AGAAGAAACTGCGGGGAAGGATGTCGAGGAGGCTGGATCAACCACCGCTGTGGTGGCAGA 923
Query 906 TAAAGTATCTAAACCGATGAAAGTTGAAATGGCAAGCAAGGAAGATGAGGATACACGTTC 965
|||||||||||| ||| |||||| |||||||||||||||||| || || || || |||||
Sbjct 924 TAAAGTATCTAACCCGTTGAAAGCTGAAATGGCAAGCAAGGACGACGAAGACACTCGTTC 983
Query 966 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGGTCGGCATCTGG 1025
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 984 AACTACCACTTCAACTTCTACACCTCGTGGGCGGAGAAGCAGTGTTGGATCGGCATCTGG 1043
Query 1026 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAAAGAAAAGAGTTTTATATGAAACTGGA 1085
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||
Sbjct 1044 ATTTTCGTTCAGGTTGGAGGAACGGGCTGAAAAACGGAAGGAGTTTTATATGAAACTAGA 1103
Query 1086 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACGAATTTGCAGGCGAAATCAAAGGAGAG 1145
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1104 AGAGAAGATCCATGCAAAGGAAGTAGAGAAGACCAATTTGCAGGCGAAATCAAAGGAGAG 1163
Query 1146 TCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CCAGGAAGAAGAGATCAAAAGGTTGAGGAAGAGCTTGACGTTCAAGGCTGGTCCCATGCC 1223
Query 1206 CAGCTTCTACAAAGAGCCTCCC-CCTAAGGTTGAATTAAAGAAGATACCAACTACTCGTC 1264
||| ||||||||||| || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1224 CAGTTTCTACAAAGAACC-CCCACCTAAGGTTGAATTGAAGAAGATACCAACTACTCGTC 1282
Query 1265 CTAAATCTCCAAAGTTAGGACGCAGAAAGAGTAGTAGCGATGCAACAGGAGGTGAAGCGG 1324
|||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1283 CTAAGTCTCCAAAGCTAGGACGCAGAAAGAGTAGCAGTGATGCAACAGGAGGTGAAGCCG 1342
Query 1325 CTCCTCGTGTGACGAAACCAAAAGACTCATCATCATCTACACTGAAGAAACCCATAACAA 1384
||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1343 CTCCTCGCGTGACAAAACCAAAAGACTCATCATCATCTACAGTGAAGAAACCAATAACAA 1402
Query 1385 AGTCTCAGTCaaagcttgaaactcaagagaagtcagtgaaggcgaaagaaaagaaaaagg 1444
|||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1403 AGTCTCAGCCAAAGCTTGAAACTCAAGAGAAATCAGTGAAGGCCAAAGAAAAGAAAAAGA 1462
Query 1445 aagtgaagaaagaagaagtagagaagagaggagaggaagagaaggCTTCTCCTGCTGTGG 1504
|||||||||||||||||| ||||||||||||||| |||||||||||| || | | ||||
Sbjct 1463 AAGTGAAGAAAGAAGAAGCAGAGAAGAGAGGAGAAGAAGAGAAGGCTACTGC--C-GTGG 1519
Query 1505 CTGCGAAACCTGAAGAGAAGAAACCGAACTCCAACAACATCCAAGTGAAGGCTGAGATAA 1564
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1520 CTGCGAAACCTGAAGAGCAGAAACCAAACTCCAATAACATCCAAGTGAAGGCTGAGATAA 1579
Query 1565 TGGCAAGTGAGGTTGCAGTGGGAGGCTGATCTGAGCAAAGTGAGCATTTAGCAGCGATAT 1624
|||| |||||||||| ||||||||||||| ||||||| ||||||| ||||||||| |
Sbjct 1580 TGGCGAGTGAGGTTGTAGTGGGAGGCTGA----AGCAAAGAGAGCATTCAGCAGCGATGT 1635
Query 1625 CCAATGTCTGCTTCTTCtttttttCTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1684
| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1636 CTAATGTCTGCTTCTT-TTTTT--CTTTCTTAAAGCATTAATGTGAATAGAGTTGTTGCA 1692
Query 1685 TTGCGTCTACTTTTTTAAGAGTTTA--CTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1742
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1693 TTGCGTCTACTTTTTTAAGAGTTTATACTTCATTCCTTCAGTTTATTTTTTGGAAAATTA 1752
Query 1743 AAGCCTCAATTGCTTCTTAAGATGGTCTCTAATGTGTTGAGCTCAAAAATGTA 1795
| ||||| ||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 1753 A-GCCTCGATTGCTTCTTAAGATGGTCTCAAATGTGTTGAACTCAAATATGTA 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5