BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482561
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35910.1 | Symbols: | RING/U-box superfamily protein | chr2... 1480 0.0
> AT2G35910.1 | Symbols: | RING/U-box superfamily protein | chr2:15072932-15074081
REVERSE LENGTH=1150
Length=1150
Score = 1480 bits (801), Expect = 0.0
Identities = 997/1086 (92%), Gaps = 35/1086 (3%)
Strand=Plus/Plus
Query 1 TATTACCAATACAATATTAGCAAATGTATACATT-AAtttttttttATAACCATCCACAA 59
|||||||||||||||||||| |||| |||||||| || | |||||| |||||||||||||
Sbjct 38 TATTACCAATACAATATTAGAAAATTTATACATTGAA-TATTTTTT-TAACCATCCACAA 95
Query 60 GTCACACAA---TT-C-TTGCTTTGACAAGCTTTCTTATCCTCATTCACATGCATTTCCT 114
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 GTCACACAATTCTTGCTTTGCTTTGACAAGCTTTCTTATCCTCATTCACATGCATTTCCT 155
Query 115 CCCTTTGTC-C-ATCTCTCTCTTAGCGTTGACTTTTGATAACCCCAAGATGCTTCAATTT 172
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CCCTTTGTCTCTCTCTCTCTCTTAGCGTTGACTTTTGATAACCCCAAGATGCTTCAATTT 215
Query 173 ACATTGTCTTATATCAAATGGCTGACC--AAACCTCTCCATTATTTCTCTTATTCCTCTT 230
||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||| |
Sbjct 216 ACATTGTCTTATATCAAATCGCTGACCAAAAACCTCTCCATTATTTCTCCTCTTCCTCCT 275
Query 231 CCAAAACCCATTAAACAAACTCCATCAAACCGCAA-CCGCCATGAACACCTTCCAACCAC 289
|| |||||||||||||||| |||||||||| || |||||||||||| ||||||||||
Sbjct 276 CCCAAACCCATTAAACAAA-ACCATCAAACC-AAACCCGCCATGAACAATTTCCAACCAC 333
Query 290 CGCCACCG-CCGGAGATGCCGGACTACAACGGCCTCCTCGGCACAGACGACATCGGAGGA 348
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 334 CGCCACCGTCC-GAGATGCCGGACTACAACGGCCTCCTCGGCACGGACGACATAGGAGGA 392
Query 349 TTTCGATACGGAATCGGAGTCTCCATTGGAGTGCTCCTCCTCATCACCACCATCACCCTC 408
||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 393 TTTCGATACGGAATCGGTGTCTCCATCGGGGTCCTCCTCCTCATCACCACCATCACCCTC 452
Query 409 ACCTCCTACTATTGCACACGTAACCAGCTCTCTTCTTCACCTTCACAGACCAGTCAAGAT 468
||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 453 ACCTCATACTATTGCACACGTAACCAGCTCTCTTCTTCACCTTCACAAACCAACCAAGAT 512
Query 469 TCGACACGTATCCATCATCATCACCACCATGTCATCATCGACGTTGTCCCCGGTCTTGAC 528
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TCAACACGTATCCATCACCATCACCACCATGTCATCATCGACGTTGTCCCCGGTCTTGAC 572
Query 529 GAAGACACCATTCAAAGCTATCCTAAGATCCTCTACTCAGAAGCAAAGGGACCAACAACG 588
|| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 573 GAGGACACCATTCAAAGCTATCCAAAGATTCTCTACTCGGAAGCAAAGGGACCAACAACG 632
Query 589 GCGTCGTGTTGTGCCATTTGTTTAGGAGACTACAAGGGAAAACATCTGCTGCGGCAGCTA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GCGTCGTGTTGTGCCATTTGTTTAGGAGACTACAAGGGAAAACATCTGCTGCGGCAGCTA 692
Query 649 CCAGATTGCAACCATCTCTTCCACCTTAAATGTATTGACACGTGGCTTAGACTCAATCCT 708
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 693 CCAGATTGCAACCATCTCTTCCACCTTAAATGTATCGACACGTGGCTTAGACTCAATCCT 752
Query 709 ACGTGTCCTGTCTGTCGGACTTCGCCGCTTCCAACTCCTCTGTCCACTCCCCTCGCCGAG 768
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 753 ACGTGTCCTGTGTGTCGGACTTCGCCGCTTCCAACTCCTCTGTCTACTCCCCTCGCCGAG 812
Query 769 GTTGTCCCCTTAGCCTCCTCCGTCGCCGCCACAAGGATGTCCTAAtttttttGTTTATTT 828
|||||||| |||||||||||||| ||||||||||| |||||||| | ||| ||||||||
Sbjct 813 GTTGTCCCTTTAGCCTCCTCCGTGGCCGCCACAAGAATGTCCTAGTGATTT-GTTTATTT 871
Query 829 TATAACCGAAGAAAGCCTCAATCTA-ACTAATCTCCGGCTTAAACTATTTATCATATTCT 887
|||||||||||||| | ||||| |||||||||||||||||||| |||| | |||||
Sbjct 872 TATAACCGAAGAAATCGA-AATCTTGACTAATCTCCGGCTTAAACTCGTTATTA-ATTCT 929
Query 888 TCTTT-AATTCCTTGTAAATTTATTTATTTT-GGTCACTAACTGATCACTGTATATAT-- 943
||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 930 TCTTTTAATTCCTTGTAAATTTGTT-ATTTTTGGTCACTAACTGATCACTGTATATACAC 988
Query 944 TCTTCGAAGCCGACTATTTGTAAGAGGAAGGAGGTTAAGGA---------CACAATTTTG 994
||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 989 TCTTCGAAGCCGAAGATTTGTAAGAGAAAGGAGGTTAAGGATGAATTTTTCACAATTTTG 1048
Query 995 TTGGATTAGTTTTTCTTTTAGCAATGTGAACGAGTTTATCTATACATACGTATCAAGAGA 1054
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1049 TTGGATTAGTTTTTCTTTAAGCAATGTGAACGAGTTTATCTATACATACGTACCAAGAAA 1108
Query 1055 GAATAA 1060
|| |||
Sbjct 1109 GAGTAA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5