BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482563
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-1... 2191 0.0
> AT2G35930.1 | Symbols: PUB23 | plant U-box 23 | chr2:15082855-15084473
REVERSE LENGTH=1619
Length=1619
Score = 2191 bits (1186), Expect = 0.0
Identities = 1344/1420 (95%), Gaps = 11/1420 (1%)
Strand=Plus/Plus
Query 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTAGCAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTATTAAGA 60
Query 61 AAAA-ATATATT-CTTTAGCTTCTTTGATCAATATATTCATCTGGGTTCTCGTCAAATAT 118
|||| ||||||| | |||||||||||||||||||||||| || ||||||||||| | |
Sbjct 61 AAAAGATATATTCCCTTAGCTTCTTTGATCAATATATTCGTCAGGGTTCTCGTC--A-A- 116
Query 119 ATTCTTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 178
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGTCCTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 176
Query 179 CCGTTTTTCCTTTGCCCTATCTCTTTGGAGATCATGAAAGATCCGGTGATAGTGTCTACC 238
||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 177 CCGTTCTTCCTTTGTCCTATCTCTTTGGAGATCATGAAAGATCCAGTGATAGTCTCTACC 236
Query 239 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAA-AAAGAACTC 297
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 237 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAAGAAA-AACTC 295
Query 298 GTGTCCGGTCACCAAACAAGACATAATTACCGACGCGGATCTCACCCCGAATCACACTCT 357
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 296 GTGTCCGGTCACCAAACAAGACAT-A--ACCGACGCGGATCTCACCCCGAATCACACTCT 352
Query 358 TCGCCGTCTCATCCAATCTTGGTGCACTCTAAACGCTTCCTATGGCGTCGAGAGGATCCC 417
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 353 ACGCCGTCTCATCCAATCTTGGTGCACCCTAAACGCCTCCTACGGCGTCGAGAGGATCCC 412
Query 418 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 472
Query 478 TTCGCATCAAAACCAAGTCAAATCTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 537
||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 473 TTCCCATGAAAACCAAGTCAAGTGTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 532
Query 538 GAACAACAAGCGGTGTTTAGAGGCGGCAGGAGTACCGGAGTTCTTGGCCAAGATCGTAAG 597
|| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 533 GACCAACAAGCGGTGTTTAGAGGCAGCGGGAGTACCGGAGTTCTTGGCCAACATCGTAAG 592
Query 598 CAACGAATCAGAAAATGAGAGTTTGACCGACGAAGCCCTCAACTTACTCTACCATCTCGA 657
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 593 CAACGACTCAGAAAATGGGAGTTTGACCGACGAAGCCCTCAACTTACTTTACCACCTCGA 652
Query 658 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAGGGTAATGATATCGTAAA 717
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 653 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAAGATAACAATATCGTAAA 712
Query 718 GTCGTTGACGAAGATCATGGAGGGCGGGATCTACGAGTCCAGAGTCTATGCGACTTTGCT 777
||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||
Sbjct 713 GTCGTTGACGAAGATCATGCAGCGTGGGATGTACGAGTCCAGAGTCTATGCCACTTTGCT 772
Query 778 TCTCAAGAACATTCTTGAAGTAGCGGATCCAATGCAGATTATGACCCTGAAGCCAGAGGT 837
||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct 773 TCTCAAGAACATTCTCGAAGTAGCGGATCCAATGCAGAGTATGACTCTCAAGCCAGAGGT 832
Query 838 TTTCACTGAGGTCGTTCAGATCTTGGACGACCGCATCTCGCAGAAGGCTACCAAAGCTGC 897
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 833 TTTCACTGAGGTCGTCCAGATCTTGGACGACCGGATCTCGCAGAAGGCGACCAAAGCTGC 892
Query 898 GTTGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACATAAGGCCGTGGAAGC 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 893 CATGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACACAAGGCCGTGGAAGC 952
Query 958 TGGAGTGATCTCTGTGATAATCGAGCTTCTCATGGAGGAGAGCTTCACATCAGAGAGGAG 1017
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 953 TGGAGTAATCTCTGTGATCATCGAGCTTCTCATGGACGAGAGCTTCACATCAGAGAGGAG 1012
Query 1018 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1072
Query 1078 CTATTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1137
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CGAGTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1132
Query 1138 GCAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCCAC 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1133 ACAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCAAC 1192
Query 1198 GCCTGCTTTGCTGCACGAGATGTTACAGTTGGGGGTTGTAGCAAAGCTTTGTCTTGTGCT 1257
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1193 GCCTGCTTTGTTGCACGAGATGTTACAGTTGGGGGTTGTAGCGAAGCTTTGTCTTGTGCT 1252
Query 1258 TCAAGTAAGCTGTGGGGGCAAGACTAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1317
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1253 TCAAGTAAGCTGTGGAGGTAAGACCAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1312
Query 1318 TAGGGTTTGGAAGGACTCGCCTTGTTTGCCAAAAAACATGATTCTTGCGTATCCTTGCTG 1377
|||||| |||||||||||||||||| | |||||||||||||||||||| ||||| |||||
Sbjct 1313 TAGGGTCTGGAAGGACTCGCCTTGTCTCCCAAAAAACATGATTCTTGCATATCCCTGCTG 1372
Query 1378 ATGAAAACCAAGAAAACAACACAAACAAGTCCAATTCTCA 1417
|||||||| |||||||||| ||||||||||||||||||||
Sbjct 1373 ATGAAAACGAAGAAAACAATACAAACAAGTCCAATTCTCA 1412
Score = 111 bits (60), Expect = 2e-23
Identities = 146/182 (80%), Gaps = 28/182 (15%)
Strand=Plus/Plus
Query 1418 ATGCTGTTGAAAAAACT--A-GTG-A-T--A-TATTCATATCATTAATCCAATTTTCCTT 1469
||||||||||||||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 1438 ATGCTGTTGAAAAAACTAAAGGAGTATTCAATTATTCATATCATTAATCCAATTTTCCTT 1497
Query 1470 AGGTTTCTTATGT--T-C-----A----C--AATGTAGATAATAGTGAAAAATGTTCATC 1515
||||||||||| | | | | | |||||||||||||||| ||||||||||||
Sbjct 1498 AGGTTTCTTATTTCGTACTTTTGATGTTCTCAATGTAGATAATAGTGGAAAATGTTCATC 1557
Query 1516 GAATATTCTTTT--ATGAAAAACTACAAAGATATCA-ATA-AA--TCACCAGTTACAAGG 1569
|||||| |||| |||||||||| ||||||||||| ||| || |||| |||||| |||
Sbjct 1558 AAATATTTTTTTTTATGAAAAACTGCAAAGATATCATATATAAAATCACAAGTTACCAGG 1617
Query 1570 CT 1571
||
Sbjct 1618 CT 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5