BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482568
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35980.1 | Symbols: YLS9, NHL10, ATNHL10 | Late embryogenesi... 1286 0.0
> AT2G35980.1 | Symbols: YLS9, NHL10, ATNHL10 | Late embryogenesis
abundant (LEA) hydroxyproline-rich glycoprotein family |
chr2:15110588-15111471 FORWARD LENGTH=884
Length=884
Score = 1286 bits (696), Expect = 0.0
Identities = 825/887 (93%), Gaps = 9/887 (1%)
Strand=Plus/Plus
Query 1 GCCATATATCCATTCATTCC-----AATTCTCCACAAAATTACTATCATGGCTGCTGAAC 55
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCATATATCCATTCATTCCAATATAATTCTCCACAAAATTACTATCATGGCTGCTGAAC 60
Query 56 AACCTCTCAATGGCGCCTTCTACGGTCCATCAGTCCCACCACCGGCTCCCAAAGGCTACT 115
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AACCTCTCAATGGCGCCTTCTACGGTCCATCAGTCCCACCACCAGCTCCCAAAGGCTACT 120
Query 116 ACCGACGTGGGCACGGTCGCGGCTGTGGCTGTTGCCTCCTTAGCTTATTCGTTAAAGTCA 175
||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 121 ACCGACGTGGGCACGGTCGTGGCTGTGGCTGCTGCCTCCTCAGCTTATTCGTCAAAGTAA 180
Query 176 TCATATCCCTTATTGTCATCCTCGGCGTAGCCGCTCTCATCTTCTGGCTCATCGTCCGTC 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TCATATCCCTTATTGTCATCCTCGGCGTAGCCGCTCTCATCTTCTGGCTCATCGTCCGAC 240
Query 236 CTCGTGCCATCAAGTTCCACGTGACCGATGCGTCCCTTACCCGCTTTGACCACACTTCCC 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGTGCCATCAAGTTTCACGTGACCGATGCGTCCCTTACCCGCTTTGACCACACTTCCC 300
Query 296 CCGACAACATTTTAAGGTATAACCTAGCACTCACTGTCCCTGTACGTAATCCTAACAAGA 355
| |||||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 301 CGGACAACATTTTAAGGTATAACCTAGCCCTCACTGTTCCTGTCCGTAACCCAAACAAGA 360
Query 356 GGATCGGAGTCTACTACGACAGAATCGAAGCTCATGCTTACTACGAGGGAAAAAGGTTTA 415
|||||||| |||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 361 GGATCGGACTCTACTACGATAGGATCGAAGCTCATGCCTACTACGAGGGAAAGCGGTTTA 420
Query 416 GTTCCATCTCGTTAACTCCTTTCTATCAAGGACACAAAAACACAACCGTTCTCACACCAA 475
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTACCATCACGTTAACTCCTTTCTATCAAGGACACAAAAACACAACCGTTCTCACACCAA 480
Query 476 CGTTCCAAGGCCAAAACCTTGTTATATTTAACGCCGGACAGTCTCGGACTTTGAACGCTG 535
||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 481 CGTTCCAAGGCCAAAACCTTGTTATTTTTAACGCCGGACAGTCTAGGACTTTAAACGCGG 540
Query 536 AGAGGATCTCCGGTGTGTACAATATAGAGATCAAGTTCAGGCTTAGGGTTAGGTTTAAGC 595
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGAGGATATCCGGTGTATACAATATAGAGATCAAGTTCAGGCTTAGGGTTAGGTTTAAGC 600
Query 596 TTGGGGACTTGAAGTTTAGGAGAATTAAGCCTAAGGTTAATTGCGATGATCTAAGGCTTC 655
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 601 TTGGGGACTTGAAGTTTAGGAGGATTAAGCCTAAGGTTGATTGCGATGATCTAAGGCTTC 660
Query 656 CTTTAAGTACCTCCAACGGAACTACAACCACTTCTACCGTTTTCCCTATCAAGTGCGACT 715
||||||||||||| |||||||||||||| || || || |||||||| |||||||||||||
Sbjct 661 CTTTAAGTACCTCAAACGGAACTACAACTACCTCCACTGTTTTCCCGATCAAGTGCGACT 720
Query 716 TCGATTTTTGAGTCTTAGAATTTTATCCTCCCCCATTCCATCATGTATTGGTTCGTTCAT 775
|||| || ||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 721 TCGACTTCTGAGTCTTAGAATTTTATCCTGTCCCATTCCATCATATATTGGTTCGTTTAT 780
Query 776 TTTTA-TTTTATTTTCTAATTGCGGCACTATACGACTTATTTTCTATATAGCCTATTGTA 834
||| | |||| |||||||||||| | ||| |||||||| ||||| | ||||||||| |
Sbjct 781 TTT-AGTTTTGTTTTCTAATTGCATCCCTA--CGACTTATCTTCTAAAGAGCCTATTGGA 837
Query 835 TACATTTGCCCACATTTATAAATAAAACAGTCTTTTATGTAATTGAT 881
|||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 838 TACATTTGTCCATATATATAAATAAAACAGTCTTTTATGTAATTGAT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43000429832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5