BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482570
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35990.1 | Symbols: | Putative lysine decarboxylase family ... 1413 0.0
> AT2G35990.1 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15113955-15116776 FORWARD LENGTH=886
Length=886
Score = 1413 bits (765), Expect = 0.0
Identities = 837/870 (96%), Gaps = 11/870 (1%)
Strand=Plus/Plus
Query 1 CTTCACATATCTATCTATATATaaataaaaagttgagaaagtgacagaaccaaaaaagaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 CTTCCCATATCTATCTATATATAAATAAAAAGTTGAGAAAGTGACAGAACCAAAAAAGAA 79
Query 61 agaaaagaaggaaaaagacag-aa-agagagagataatggaagagacaaaatcaagaTTC 118
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 80 AGAAAAGAAGGAAAAAGACAGAAAGAGAGAGAGATAATGGAAGAGACAAAATCAAGATTC 139
Query 119 AGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAACAAAACCACTTATCACGACGCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAACAAAACCACTTATCACGACGCT 199
Query 179 GCTCTCCAACTCGCTCACCAACTGGTGGAAAGAAACATCGATTTGGTGTATGGAGGGGGA 238
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 200 GCTCTCCAACTCGCCCACCAACTGGTGGAGAGAAACATCGATTTGGTGTATGGAGGAGGA 259
Query 239 AGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATAATGGTGGTCGTCATGTTCTT 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 260 AGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATGATGGTGGTCGTCATGTTCTT 319
Query 299 GGGATCATTCCGAAGTCTCTAGCACCAAGAGAGATAACCGGTGAATCAATAGGAGAAGTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GGGATCATTCCGAAGTCTCTAGCACCAAGAGAGATAACCGGTGAATCAATAGGAGAAGTT 379
Query 359 ATAACAGTATCGACTATGCACCAAAGGAAGGCTGAAATGGTTCGCCAAGCGGATGCCTTC 418
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 380 ATAACAGTATCGACTATGCACCAAAGGAAGGCTGAAATGGGTCGCCAAGCGGATGCCTTC 439
Query 419 ATTGCACTTCCTGGTGGATATGGGACATTTGAAGAGTTGTTGGAAGTCATCACTTGGTCT 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 440 ATCGCACTTCCTGGTGGATATGGGACATTTGAAGAGTTGTTGGAAGTCATCACCTGGTCT 499
Query 479 CAACTTGGGATCCACACTAAACCGGTGGGACTATTGAACGTGGATGGATTCTACGATTCA 538
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CAGCTTGGGATTCACACTAAACCGGTGGGACTATTGAACGTGGATGGATTCTACGATTCA 559
Query 539 CTATTGACGTTTATAGATAAGGCAGTGGACGAAGGCTTCGTCTCCTCCACCGCTCGCCGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CTATTGACGTTTATAGATAAGGCAGTGGACGAAGGCTTCGTCTCCTCCACCGCTCGCCGT 619
Query 599 ATCATCGTCTCTGCTCCAAACGCTCCTCAATTACTTCAACTTCTTGAGGAGTATGTTCCA 658
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ATCATTGTCTCGGCTCCAAACGCTCCTCAATTACTTCAACTTCTTGAGGAGTATGTTCCA 679
Query 659 AAACACGACGATTTTGTATCCAAAATGGTGTGGGACGATACTACGGATGCTTTCACTTTG 718
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 680 AAACACGACGATTTTGTATCCAAAATGGTGTGGGACAATACCACGGATGCTTTCACTTTG 739
Query 719 GAAGGCGACTCATTTTAGCTATATTAGTTCATTCGTATCTTAGTCTACTTTTATTGTATT 778
||||||||||| |||||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct 740 GAAGGCGACTCGTTTTAG--ATAT-AGTTCATTTGTATCTTAGTCTACTTTTATTTTATT 796
Query 779 -TTATAGAAA-CTCGTTTCTTATTGGCCATTATTCAAAATTTTGATTTTTGTATCCCATG 836
||| | ||| ||||||| |||||||||||| | |||| ||||||||||||||| |||||
Sbjct 797 ATTA-A-AAATCTCGTTTTTTATTGGCCATT-T-CAAATTTTTGATTTTTGTATACCATG 852
Query 837 TATTGAGCTTATACAACAATGGAGCTTGCC 866
||||||||||||| ||||||||| ||||||
Sbjct 853 TATTGAGCTTATATAACAATGGAACTTGCC 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42246917627
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5