BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482571
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36000.1 | Symbols: | Mitochondrial transcription terminati... 1940 0.0
> AT2G36000.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr2:15117075-15118627 FORWARD
LENGTH=1461
Length=1461
Score = 1940 bits (1050), Expect = 0.0
Identities = 1335/1459 (92%), Gaps = 73/1459 (5%)
Strand=Plus/Plus
Query 1 ATCACAACTCTGTTCCAAGTCTTATCC--T--T--TCATCATCACTTACCTTCTTCAC-- 52
||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1 ATCACAACTCTGTTCCAAGTCTTATCCTTTCATCATCATCATCACTTACCTTCTTCACAG 60
Query 53 ACAGAGAG------------ATGTAATGTGAGATGTCTCTTGAACAATGCAACAAGAAGc 100
| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAGAGCTTCATCATCATATGTAATGTGAGATGTCTCTTGAACAATGCAACAAGAAGC 120
Query 101 tctctctttcctctcttcctctttcccttcccttcaccacaattttcccacactttctcG 160
||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 121 TCTCTCTTTCCTCTCGTCCTCTCTCCCTTCCCTTCACCACAATTTTCCCTCTCTTTCTCG 180
Query 161 CCTCCGCTTCCACAATTTTCCCGCACTTTCCTTCAAACCAAACAC-T--TC-T--TCTTC 214
|||||||||| |||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 181 CCTCCGCTTCAACAATTTTCCCGCACTTTCCTTCAAACCAAACACTTCATCATCATCTTC 240
Query 215 ATCACTCTTCAAATCCCCAAATAT-CCC-CTCTCT-CTCC-TC-C-AC--C-ACAGCAAC 265
|||| |||||||||||||| |||| ||| |||||| |||| | | || | ||| ||||
Sbjct 241 ATCATTCTTCAAATCCCCAGATATACCCTCTCTCTCCTCCACCACAACAACAACAACAAC 300
Query 266 CACCGAAACCCTAGAATCCTCAATCCACGAGAAACTCATTTACCTCGATTCACTCGGAAT 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACCGAAACCCTAGAATCCTCAATCCACGAGAAACTCATTTACCTCGATTCACTCGGAAT 360
Query 326 CGATTTCTTAACCCTAATCAACCGTCATCCTCCTCTCCTCTCCACCGCTCTCTCCGCCGT 385
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CGATTTCCTAACCCTAATCAACCGTCATCCACCTCTCCTCTCCACCGCTCTCTCCGCCGT 420
Query 386 TGAATCCGTCGTCGATTACATGACCACTCCACCAATCAACTTCACCTTACAAGATTTTCG 445
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 421 TGAATCAGTCGTCGATTACATGACCACTCCACCAATAAACTTCACTTTACAAGACTTTCG 480
Query 446 CCGCCTCGTCTCCATGTGTCCCGAGCTTCTCACTTCACCGTTAACCTCACACACAATCCC 505
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 481 CCGCCTCGTCTCAATGTGTCCAGAGCTTCTCACTTCACCTTTAACCTCACACACAATCCC 540
Query 506 AGTCATCACTTTCCTCCTCCGTGAAGTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGC 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTCATCACTTTCCTCCTCCGTGAAGTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGC 600
Query 566 TTTACGTCGTCGTCCTCGTCTTCTCGCTTGTAGCGTCGATCACCAGCTTCGACCAACGCT 625
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 TTTACGACGTCGTCCTCGTCTTCTCGCTTGTAGCGTCGATCACCAGCTTAGACCAACGCT 660
Query 626 TTACTTTCTCCAGAGAATCGGAATCTTAGATCCGCATAAACATACGTATCTTCTCTCTTG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTACTTTCTCCAGAGAATCGGAATCTTAGATCCGCATAAACATACGTATCTTCTCTCTTG 720
Query 686 TAGCGTTGAAC-ATAAACTCGTACCACGGATTGATTTCTTTGAGAAGTTAGGATTCTCGC 744
|||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 721 TAGCGTTG-ACAATAAACTCGTACCACGGATTGATTACTTCGAGAAGTTAGGATTCTCGC 779
Query 745 GGCGGAGCGCGACCGCGATGTTTAAGAGATTCCCGCAGCTGTTTAATTACAGTATTGCTG 804
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGCGGAGCGCCACCGCGATGTTTAAGAGATTCCCGCAGCTGTTTAATTACAGTATTGCTG 839
Query 805 AGAATTATGAGCCGAAGTTGAAGTATTTGATGGTGGAGATGGAGAGAGATGTTAGAGAGG 864
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 AGAATTATGAGCCGAAGTTGAAGTATTTGATGGTGGAGATGGGGAGAGATGTTAGAGAGG 899
Query 865 TTCTTGAGTTTCCTCAGTATTTTTCGTTTAGTTTGGAGAATCGGATTAAACCGAGACATG 924
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCTTGAGTTTCCTCAGTATTTCTCGTTTAGTTTGGAGAATCGGATTAAACCGAGACATG 959
Query 925 AAGCTTGTGCGGCGAAAGGTGTGAGGTTTCCATTGCCGGTGATGTTGAAGACGAATGAAG 984
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 AAGCTTGTGCTGCGAAAGGTGTGAGGTTTCCATTGCCGGTGATGTTGAAGACTAATGAAG 1019
Query 985 CTGGTTTTAGAGATACATTGGAGGTATGTTGTGATTCTTCTCCGCCATTGAAGACATCTC 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 CTGGTTTTAGAGATACATTGGAGGTATGTTGTGATTCTTCTCCGCCATTGAAGACCTCTC 1079
Query 1045 GCCTTGTTACTGTACAAAA-GATTCTTGATTTATAGAGTTTTGTGTGCTAGGAACTTGGA 1103
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1080 GCCTTGTTACTGTACAAAAAGATTCTTGATTTATAGAGTTTTGTGTGCTAGGA----G-A 1134
Query 1104 ACATGGAAGCAAGTACATTTTTGTAATGAATGATTCTGGAGGAACTCAAAGAATGAAGAA 1163
|||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||
Sbjct 1135 ACATGGAAGCAAGTACATTTTTGTAATGAATGATGATGAAG-AACTCAATGAATGAAGAA 1193
Query 1164 ACCGGCCTCTGCCTACATTTAGAGAG-CG-AG-GGAGATGGTGAAATTGTATCTTTGATA 1220
||| |||||||||||||||| |||| | | || |||||||| || ||||| ||||
Sbjct 1194 ACCAGCCTCTGCCTACATTTTGAGACACACACAGG-GATGGTGAG-TTAAATCTT-GATA 1250
Query 1221 GGAGAAAGAATGTTCATTTACAAT--A-GAATGTC-GAT-TCT--CGAT-TCCGATGTT- 1271
||||||||||||||||||||||| | || | || ||| | | || | | | | ||
Sbjct 1251 AGAGAAAGAATGTTCATTTACAATTCACGA-T-TCCGATGTATTTCGGTCTA-GTTATTG 1307
Query 1272 TT--T-AA-------TCAAGTGTATGTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCA 1321
|| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TTAGTGAACGAGAAATCAAGTGTATGTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCA 1367
Query 1322 GAGAATTGTGAATTCTACAATTGGAGGCAGGATGATGAATGTGTAAACTGATTTGCGTAA 1381
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1368 GAGAATTGTGA-TTCTACAATTGGAGGCAAGATGATGAATGTGTGAACTGATTAGCGTAA 1426
Query 1382 CGGTTTAGTGATTGGTCTT 1400
||||||||| |||||||||
Sbjct 1427 CGGTTTAGTTATTGGTCTT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5