BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482576
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36020.1 | Symbols: HVA22J | HVA22-like protein J | chr2:151... 1989 0.0
> AT2G36020.1 | Symbols: HVA22J | HVA22-like protein J | chr2:15123154-15125588
REVERSE LENGTH=1317
Length=1317
Score = 1989 bits (1077), Expect = 0.0
Identities = 1251/1333 (94%), Gaps = 20/1333 (2%)
Strand=Plus/Plus
Query 1 TATTCCAATTTTAGAACTCAAGCGTCTTCATAATCTTCCTCtttttttccttatctttga 60
|||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||
Sbjct 2 TATTCCAATTTTAGAACTTACGCGTCTTCATAATCTTCCTCTTTTTTTCTTTGTCTTTGA 61
Query 61 tattcaaagtttttgtatttgttatttt-tttgCTTAAACCGGGGAGACACCCTCTCCAT 119
||||||||||||||| ||| || |||| ||||||||| |||| ||||||||||||||||
Sbjct 62 TATTCAAAGTTTTTG--TTTATT-TTTTCTTTGCTTAACCCGGAGAGACACCCTCTCCAT 118
Query 120 AAATTTAGTTTTGATCCGTCTGGGTTCCTTGAAGAAAATAAA-ATCCTATTCCATTCATA 178
||||||||||||||||| |||||||||||||||||||| ||| | || ||||||||||||
Sbjct 119 AAATTTAGTTTTGATCCCTCTGGGTTCCTTGAAGAAAA-AAACA-CCAATTCCATTCATA 176
Query 179 TTCTTCTTCATACGTTCAAGAATCCTTACGAGGACGAGATCTTCCCAACGTCTTTGATCT 238
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 177 TTCTTCTTCATACGTTCAATAATTCTTACGAGGACGAGATCTTCCTAACGTCTTTGATCT 236
Query 239 TCTTCAATAGGAGATAATTCTGATTTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 298
|||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 237 TCTTCATTAGGAGATAAGTCTAAACTGGTCGAAGATGTTGGGAGATTTCATCATCAGACT 296
Query 299 CCTTGTATTAATATTAGGGTACACATACCCAGCATTTGAATGCTTTAAAACGGTGGAGAA 358
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 CCTTGTATTGATATTAGGGTACACATACCCAGCATTCGAATGCTTTAAAACGGTGGAGAA 356
Query 359 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAGTACTGGATACTTTTGGCGCT 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 357 GAACAAAGTTGATATCGAGGAACTCAGATTTTGGTGCCAATACTGGATACTTTTGGCGCT 416
Query 419 AATTTCATCATTTGAGAGGGTTGGCGAtttttttATCTCATGGTTGCCGTTATACGGAGA 478
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 AATTTCATCATTCGAGAGGGTTGGCGATTTTTTTATCTCATGGTTACCGTTATACGGAGA 476
Query 479 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGAAAGTAGTCTTCTTCGTATATCTCTGGTACCCTAAAACAAAGGGAACGAGACATGT 536
Query 539 TTATGAGACATTGTTGAAGCCATACATGGCTCAACATGAGACAGAGATTGACAGAAAGAT 598
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 537 GTATGAAACATTGTTGAAGCCATACATGGCTCAACACGAGACAGAGATTGACAGAAAGAT 596
Query 599 TATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTCTACTTCCACAACTTTGCCCA 658
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 597 CATGGAGTTGCGAGCTCGAGCTTGGGACTTTTTCATCTTTTACTTCAACAACTTCGCCCA 656
Query 659 GGCTGGTCAATCGACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCAGTCCGGTT 718
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 GGCCGGTCAATCCACCTTGATCCAGGGTTTTCAGTACGTACTCGCCCAATCGGTCCGGTT 716
Query 719 CTCTGCCGCTGCAGCTAACCAACCGCCGATGGAGCGGAACGTGAACATGAACGCCCAGTC 778
||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||
Sbjct 717 CTCTGCCGCTGCAGCTAACCAACCGCCAACGGAGAGGAACGTGAACATGAACGCGCAGTC 776
Query 779 ACCGGTGGAGATGGACAATGATCCGCCATCACCGCGGGCTCCAAGACCGCTGAACAAATC 838
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 777 ACCGGTGGAGATGGACAATGATCCTCCATCACCGCGCGCTCCAAGACCGCTGAACAAATC 836
Query 839 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACTATCTGCGTTGCGATCGCTAGAGAAGCAAACAAGCAGAGGGAGGAAGTGGCCGCCACC 896
Query 899 AACACCACCACCAACACCAGGCCGAGACTCAGCCGGGACATTCAACGGTGAAGATGGAGT 958
|||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct 897 AACACCACCACCAACACCAGGCCGAGACTCCGCCGGAACATTTAACGGTGATGATGGAGT 956
Query 959 CAACATTCCCGATACAATTCCGGGATCACCCCTGACCGATGCTCGAGCTAAGCTCCGACG 1018
||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 957 CAACATTCCTGATACAATTCCGGGATCACCCCTCACTGATGCTCGAGCTAAGCTGCGACG 1016
Query 1019 TTCTAACTCCAGAACTCAGCCCGCGGCATAGTAACGTAAACGTACATATACGTGACTCGA 1078
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1017 TTCTAACTCCAGAACTCAGCCAGCGGCATAGTAACGCAAACGTACATATACGTGACTCGA 1076
Query 1079 CAAAGGAACCCTTTTCGATTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1138
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAAAGAAACCCTTTTCG-TTTGTTTAAAGATATATAGGGAAAGAAAAGTGAATGAAAGTT 1135
Query 1139 TTGAATTGAAGCAAAACAGATTGAtttttttttctg-tgttttttGTAAATTGAAGCAGT 1197
|||||||||| ||||||||||| ||||||||| | |||||| ||||||||||||||||
Sbjct 1136 TTGAATTGAAACAAAACAGATTTTTTTTTTTTTTTCATGTTTTCTGTAAATTGAAGCAGT 1195
Query 1198 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTGGTTTGAACTTCCGGCTAGGGTGT 1257
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | |
Sbjct 1196 AAGTATTAATACAGCGAGAATATTTGTGTTTGTTTTCGTTTAAACTTCCCGCT----T-T 1250
Query 1258 TCAATCAATCTGGATATTGATTTGAGTTTGGGTTTTTTCATATAGCTGATTATGAAGATG 1317
|||| | |||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1251 --AATC---C-GGATATTGATTTGAGTTTGGATTTCTTCATATAGCTGATTATAAAGATG 1304
Query 1318 CATTTGAATGGTC 1330
||||||| |||||
Sbjct 1305 CATTTGAGTGGTC 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5