BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482579
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36050.1 | Symbols: ATOFP15, OFP15 | ovate family protein 15... 1554 0.0
> AT2G36050.1 | Symbols: ATOFP15, OFP15 | ovate family protein
15 | chr2:15135572-15136749 REVERSE LENGTH=1178
Length=1178
Score = 1554 bits (841), Expect = 0.0
Identities = 1005/1080 (93%), Gaps = 28/1080 (3%)
Strand=Plus/Plus
Query 1 AAACATGAAACTCCCATTTCTATACAAGAACCACTCAACATCTTCATATTCTTCAAATTC 60
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 109 AAATATGAAACTCCCATTTCTAAACAAGAACCACTCAACATCTTCATATTCTTCAAATTC 168
Query 61 ATCATCCTCTTCATGGCCATGGCCTTCTTGTAATCAAAACCCTAAGACCTTATCTTTCAG 120
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 169 ATCATCCTCTTCATGGCCATGGCCTTCTTGTAACCAAAACCCTAAAACCTTATCTTTCAG 228
Query 121 AGCCACCATCACTTTCACCAACCCTATTCACGACCAAGATGAC---GA--T-GA---GCT 171
||||||||||||||||||||||||||| ||||||||||| ||| || | || |||
Sbjct 229 AGCCACCATCACTTTCACCAACCCTATCCACGACCAAGACGACGATGAGCTCGACCTGCT 288
Query 172 CGACCCACCGGAGATTACTGAGTCGGTAGAGAATGTGATAAAAGGGCTAAGATCATCAGA 231
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 289 CGACCCACCGGAGATTACAGATTCCGTAGAGAATGTGATAAAAGGGCTAAGATCATCAGA 348
Query 232 GAGACTCATCTTCGAAAGCAAAGGAGAAACCAACTCTATACTTGAAGGAGCTACGAGCAA 291
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 GAGACTCATCTTCGAAAGCAAAGGAGAAACCAACTCTATACTTGAAGAAGCTACGAGCAA 408
Query 292 GCGagaagaagacgaagacgaagaagaagGCTTCATGCTCTTCTCCTTGGAATCAAACGA 351
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 409 GCGAGAAGAAGA-G--GACGAAGAAGAAGGCTTCATGCTCTTCTCCTTGGAATCAGACGA 465
Query 352 CCCTTACTCTGATTTCAAGAGATCCATGGAGGAGATGGTTGAGGCACACGCGCTTCACCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCCTTACTCTGATTTCAAGAGATCCATGGAGGAGATGGTTGAGGCACACGCGCTTCACCA 525
Query 412 CGACTGGAAAAGCCTCGAGAAGCTTCTTCTTCAGTTCTTGAAAGTCAACGCCAAGACCAG 471
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 CGACTGGAAAAGCCTCGAGAAGCTTCTCCTTCAGTTCTTGAAAGTCAACGCCAAGACCAG 585
Query 472 CCATCGATACATCTTCGCGGCCTTCGTCGATCTCCTCATGAACTTAGCACTTA-ACACGA 530
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 586 CCATCGATATATCTTCGCGGCCTTCGTCGATCTCCTCATGAACTTAGCACT-AGACACGA 644
Query 531 AAAAACCCATCACCAATAGCGACATTTCCAAAGATGACGGCGTCTCGGCCTCACGCGCCG 590
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAAAAGCCATCATCAATAACGACATTTCCAAAGATGACGGCGTCTCGGCCTCACGCGCCG 704
Query 591 CCGCTGCCGGAGAAGCAAGCACTTCTTGTTGTAATAGTATGACTCTTGGAGAATCTCCGT 650
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 705 CCGCTGCTGGAGAAGCAAGCACTTCTTGTTGTAATAGTATGACTCTTGGCGAATCTCCAT 764
Query 651 CGTCTCCCTTGTCATTCTACACGTCGTGTTCGTCTTCTTCTTCCTCCGATGAGACTTCCT 710
||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||
Sbjct 765 CGTCTCCCTTGTCGTTTTACACGTCGTGTTCTTCATCTTCTTCCTCCGATGAGACTTCCT 824
Query 711 CGACGTCCGTACGTTTCTTGCCGCTGTCTTCTTTGTTAGAGATGGATGAGAACACTAAAG 770
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 825 CGATGTCCGTACGTTTCTTGCCGCTGTCTTCTTTGTTAGAGATGGATGAGAAGACTAAAG 884
Query 771 ACATTATGGTTTAGAACGGTTTTGCAttttttttCTTAATTAATTTGTTCTTT--AGCTT 828
| ||| | |||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 885 AGATTTTAGTTTAGAACGGTTTTGCATTTTTT--CTTAATTAATTTGTTTTTTTTAGCTT 942
Query 829 AATTAAAATTTGTGCAGAATTATAACATTGGCTACCCCGA-TACACATATGGAGATGATG 887
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 943 AATTAAAATTTGTGCAGAATTGTAACATTGGCTACCCCGACTACACATATGGAGATGATG 1002
Query 888 AACCGTATTACTATTATATTGGTATGTATTGTGCTTACCTTTTA-ATTTTTTCAATAATG 946
|| ||||| | |||||||||||| ||||||||||| || ||||| |||||| || || ||
Sbjct 1003 AATCGTATGAATATTATATTGGTCTGTATTGTGCTCACTTTTTATATTTTT-CATTAGTG 1061
Query 947 TGGAAAATAGTTTTCGTTT-ATGTAGGATGATGATAGTTGGATTGCACTTA-tttttttG 1004
||||| | ||||||||| | |||||||||| ||||||| || |||||| ||||||||
Sbjct 1062 TGGAA--T--TTTTCGTTTTAAGTAGGATGATAATAGTTGAATCACACTTAATTTTTTTG 1117
Query 1005 TTTCTTTGGTAAAGACAAGGATTAGGCCATTGGATCGGTTA-TTAATCTCAGTTTTTGAC 1063
||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1118 TTTCTTTCGTAAAAACAAGTTTTAGGCCATTGGATCGGTTAATTAATCTCAGTTTTTGAC 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5