BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482581
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr... 1055 0.0
AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 | ch... 265 6e-70
> AT2G36060.2 | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15142677-15144182
REVERSE LENGTH=960
Length=960
Score = 1055 bits (571), Expect = 0.0
Identities = 763/845 (90%), Gaps = 56/845 (7%)
Strand=Plus/Plus
Query 1 CCCACTCCAATTCTCGTCGCACCAAT--AGTAATTCAACTGCCCC-AA-T--T-T-G-C- 50
|||||||||||||||||||||||||| ||||||||||||||||| || | | | | |
Sbjct 3 CCCACTCCAATTCTCGTCGCACCAATAGAGTAATTCAACTGCCCCAAATTGCTCTCGACT 62
Query 51 ----ATTAGC-G-TTA--G--TGTG-TTTCGCATCAGAGAATCTCTCAGTTCTTGTCTTC 99
||| | | ||| | |||| |||||||||||||||||||||| | |||
Sbjct 63 TTTTATTCTCGGATTAGCGTTTGTGCTTTCGCATCAGAGAATCTCTCA------G--TTC 114
Query 100 TCTCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAAC-C----CT-A----A 149
| ||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 115 T-TCTCAATTTAGGTCATCAGATCTCACAATCAATCGACTCGAACTCAAATCTCACTTCA 173
Query 150 TC-AT-GACTCTTGGCTC-AGG---AGGATCAAGTGTTGTCGTTCCGAGGAATTTCAGGT 203
|| || | || || ||| || |||||| |||||||||||||||||||||||| |||
Sbjct 174 TCAATCAAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGTTCCGAGGAATTTCCGGT 233
Query 204 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TGCTGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAA 293
Query 264 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACA 353
Query 324 AC--A-CTGTACATGAGGGTCGAATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 380
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 354 ACGTAACTGTACATGAGGGTCGGATTTATCAGTTGAAGCTCTTCTGTGACAAAGATTACC 413
Query 381 CTGAGAAACCCCCGACTGTTCGGTTCCATTCACGTATCAACATGACTTGTGTCAACCATG 440
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 CTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATG 473
Query 441 AAACCGGCGTGGTGGATTCGAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGGCAGTACA 500
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 474 ATACCGGCGTGGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACA 533
Query 501 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGACTGCATCGCATAACCGGAAGC 560
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 CAATGGAGGACATACTGACTCAATTGAAGAAGGAGATGGCTGCATCGCATAACCGGAAGC 593
Query 561 TTGTTCAACCTCCTGAAGGAACCTTCTTTTAATACTCTCAAAGCCTTTTACCTTTGAGGG 620
||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 594 TTGTTCAACCTCCCGAAGGAACTTTCTTCTAATACTCTCAAAGCCT---ACCTTTGAGGG 650
Query 621 GCTTCTCCATTGTTGTTGATCTTCAAGCTTTTTCTTTCGTACCTAAAAGTAAAAACAATG 680
||||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 651 GCTTCTCCATTGTTG--G-TCTTCAAGCTTTT-CTTTCGTACCTTAAAGTAAAAACAATG 706
Query 681 GTGTCTGTGGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTATGCA 740
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 707 GTGTCTGTCGATGAATGATGATGTTCGATTGATCATCTGGAGTTTAAATCCTTGTGTGCA 766
Query 741 AATATATCTAGACAACGTTGTCTCATGACTTCATCTTCTCAATTTAGATATAATATGGAA 800
||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 767 AATATATCTAGACAACGCTGTCTCACGACTTCATCTTCTCAGTTTAGATATAATATGGGA 826
Query 801 AACAA 805
|||||
Sbjct 827 AACAA 831
Score = 89.8 bits (48), Expect = 4e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 821 TTTACTGCACTTTTAGTCGACCTGAACTCTCCTATTGTGTTCACATTCGAGCGCAATTCA 880
|||||| | |||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 897 TTTACTTCGCTTTTATTCGACCTGAACTCTCCTATTGTGTTCACATTTGAACGCAATTCA 956
Query 881 TGC 883
|||
Sbjct 957 TGC 959
> AT3G52560.4 | Symbols: UEV1D-4 | ubiquitin E2 variant 1D-4 |
chr3:19494377-19496095 REVERSE LENGTH=937
Length=937
Score = 265 bits (143), Expect = 6e-70
Identities = 168/180 (93%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 148 AATCATGACTCTTGGCTCAGGAGGATCAAGTGTTGTCGTTCCGAGGAA-TTTCAGGTTGC 206
||| ||||||||||||||||||||||| || ||||| ||||||||||| |||| |||||
Sbjct 138 AATTATGACTCTTGGCTCAGGAGGATCTAGCGTTGTTGTTCCGAGGAATTTTC-GGTTGT 196
Query 207 TGGAGGAGCTTGAACGTGGAGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGG 266
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 197 TGGAGGAGCTTGAACGTGGGGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGG 256
Query 267 ATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACA 326
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 257 ATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACA 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5