BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482583
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner m... 2593 0.0
AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner m... 1471 0.0
> AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner
membrane subunit 44-2 | chr2:15144836-15148131 REVERSE LENGTH=1929
Length=1929
Score = 2593 bits (1404), Expect = 0.0
Identities = 1743/1897 (92%), Gaps = 62/1897 (3%)
Strand=Plus/Plus
Query 1 AAATGGTATCGACAGAAACCTCTCTAGGG------C--TTTAAGGCAACACTCCTGTCTT 52
|||||||||||| |||||||||||||||| | |||||||||| ||| |||||||
Sbjct 1 AAATGGTATCGAGAGAAACCTCTCTAGGGCTTTAACAGTTTAAGGCAA-ACTTCTGTCTT 59
Query 53 CTGGGTTTGGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCttt-ttttttCAATA 111
|| | |||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 60 CT--G---GGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCTTTCTTATTTCAGTA 114
Query 112 AACCAAAGATATGTTTTCAATCTTAATCTGATTCTTTCTCGCAGCGGCT-A----A-T-T 164
||| | ||||||||||||||||| ||||||||||||||||||||||||| | | | |
Sbjct 115 AACGAGAGATATGTTTTCAATCTCAATCTGATTCTTTCTCGCAGCGGCTAATTCTAGTGT 174
Query 165 --C---------CTCTGTTTCTTCAAAGTTTA-TTCTAATAAAAAATCACTACGAAGGTT 212
| ||||||||||||||| |||| |||| | ||| ||||||||||| ||
Sbjct 175 CGCTAATAGGGTCTCTGTTTCTTCAAA-TTTAGTTCT--T-TAAATTCACTACGAAGATT 230
Query 213 GTTGTAATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTC 272
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 231 TTTGTTATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTCTC 290
Query 273 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGGCTTCTGTC-GGGAAATGG 331
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 291 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGTCTTCT-TCAGGGAAATGG 349
Query 332 GTATGCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGA 391
|| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 350 GTTTGCGAGTCATCGACGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAGATTAGAGGAGA 409
Query 392 AGCTGATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGA-G 450
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
Sbjct 410 AGCTGATAGCAATCCTGAATTTCAAAAGACAGTGAAGGAGTTCAAGGAAAGAGCA-GAGG 468
Query 451 AGTTGAAAGATATTAGAGAGGACTTGAAAGCTAGAACGAAACAAACTACTGAGCAGCTGT 510
||||| ||| | ||| |||||||||||||| |||||||||||||||||||||| || |||
Sbjct 469 AGTTGCAAGGTGTTAAAGAGGACTTGAAAGTTAGAACGAAACAAACTACTGAGAAGTTGT 528
Query 511 ATAAGCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 570
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATAAACAAGGTCAAGGCGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 588
Query 571 GTGTGAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAA 630
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 589 GTGTGAAAGACAAGTTCTCAGCAGCTACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGTA 648
Query 631 AGGAGGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 690
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 AGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 708
Query 691 AGCAGCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAA 750
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 709 AGCAGCAGCAATCTGGTTCTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCCA 768
Query 751 GCATTTCTTCACCAAAAATATCCGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 810
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 769 GCATTTCTTCACCAAAACTATCTGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 828
Query 811 GACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 870
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GACTTGACATTGTAAAGGATGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 888
Query 871 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGGAGATAGTGATTACGC 930
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||
Sbjct 889 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACGAGAACGGAGATGGTAATTATGC 948
Query 931 CAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAATCCTTAAGAGAAAAGATGCAAGGTT 990
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 949 CAACAAAACAGTCTAAGTGGCAAAAAAAATGGGAATCCTTAAGAGAAAAGATGCAAGGCT 1008
Query 991 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTAACAAGAGCCAAGAGA 1050
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1009 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCAGTTGTCAACAAGAGCCAAGAGA 1068
Query 1051 TTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1110
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1069 TTGCAGAAGATGTGAGGGAAAAGTGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1128
Query 1111 AGGACATGAATGAGAAGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAAGAGATAC 1170
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1129 AGGACATGAATGAGAGGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAGGAGATCC 1188
Query 1171 GTCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGT-AGAAATTCAGGAAGCCATC 1229
| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1189 GCCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGTT-TCAGAAATTCAGGAAGCCATC 1247
Query 1230 AGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTTGAAGAAGTATTGCAGC 1289
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1248 AGACCGGTCTTGAATGCATATAGTAAGGGAGATGCTAAGACCTTGAAGAAGTATTGCAGC 1307
Query 1290 AAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTC-CAGAGTCATGGCTATTT 1348
|||||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||
Sbjct 1308 AAGGAATTGATTGAACGGTGTACGGCAGAGCACAGAGCTTTCAC-GAGTCAAGGTTATTT 1366
Query 1349 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGAAATTAAAGAGACAAAGATGATGGG 1408
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1367 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGATATTCAAGAGACAAAGATGATGGG 1426
Query 1409 AACTTCTCCAGTAATCATCATCAGGTTCCAAACGCAAGAAATCTTCTGCGTTCGCGACCA 1468
|||| |||||||||||||| ||||||||||||||||||||||||||||||| || || ||
Sbjct 1427 AACTACTCCAGTAATCATCGTCAGGTTCCAAACGCAAGAAATCTTCTGCGTCCGTGATCA 1486
Query 1469 GAATGGAAACATCAAAGAAGGAGGCCAGGACACGATACACACGGTGTACTACGATTGGGC 1528
| ||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1487 GGATGGAAAAATCAAAGAAGGAGGCCAGGACACAATACACACAGTGTACTACGACTGGGC 1546
Query 1529 AATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCGATTTATCCCATTTGGAGGCT 1588
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1547 TATGCAACAAGTGGATGCAGCAGAGTTAGGGGAAGATGCGATTTATCCCATTTGGAGGCT 1606
Query 1589 CAGAGAAATGCTGAGAGCGGGTGTTCAAGCTCTCATTTAAATCTTCATCATCTTTTAACT 1648
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1607 CAGAGAGATGTTGAGAGCGGGTGTTCAAGCTCTCATTTAATTCTTCATCATCTTTTAACT 1666
Query 1649 TTATAATAAGCTAAGCC-TCTCTCTTTGCAGTGTACCATT-ATT-TACTCAATCTTGT-- 1703
| ||||||||||||||| |||||||||||| |||||||| | | ||| || | || |
Sbjct 1667 T-ATAATAAGCTAAGCCCTCTCTCTTTGCAATGTACCATGCAATGTAC-CATTATT-TAC 1723
Query 1704 TCAC--TCTTGA--ACTATATATAtttttttttttGGTTTTCTTCTTCTCTCTGGAAGGA 1759
||| ||||| ||| | || ||||||||||| |||||||||| |||| |||||||
Sbjct 1724 TCAAAATCTTGTTCACTCGAGAT-TTTTTTTTTTTCGTTTTCTTCT-CTCT--GGAAGGA 1779
Query 1760 GTGGGTTCCCATGGTTCCGGGGAATAAGTTTTGACAAATATATAAATAGATCTCAAGTCT 1819
||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1780 GTGGGTTCCCATGTTTCAGGGGAATAAGTTTTGACAAATATATAAATACATCTCAAGTCT 1839
Query 1820 TTTTCAAGTTTAATGAAGTTTATTGTTTTGTTTGTAT 1856
|||||||||||| ||||||| |||||||||||||||
Sbjct 1840 TTTTCAAGTTTAGCGAAGTTTGTTGTTTTGTTTGTAT 1876
> AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner
membrane subunit 44-1 | chr2:8836018-8838598 REVERSE LENGTH=1419
Length=1419
Score = 1471 bits (796), Expect = 0.0
Identities = 1235/1441 (86%), Gaps = 53/1441 (4%)
Strand=Plus/Plus
Query 219 ATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTCCAG-CA 277
||||||| ||||||| | |||||||||||||||||||||||||||||||||| | | ||
Sbjct 1 ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTAC-GTCA 59
Query 278 ATTGGTGCACCAACGGAGAGTGGGCGCAAGACT-AGGGCTTCTGT-CGGGAAATGGGTAT 335
| | | |||||||| |||| ||||||| | || | |||| | | | | |||||||
Sbjct 60 ACTATTCCACCAACGAAGAGCAAACGCAAGA-TCAGAGTTTCT-TCCTGCTATTGGGTAT 117
Query 336 GCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGAAGCT 395
|||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||
Sbjct 118 ACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAAGCT 177
Query 396 GATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGAGAGTTG 455
||||||||||||||||| ||| |||||| |||||| ||||||||||| ||| ||||||
Sbjct 178 CATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAGTTT 237
Query 456 AAAGATATTAGAGAGGACTTGAAAGCT-AGAACGAAACAAACTACTGAGCAGCTGTATAA 514
|||| | | | ||||||| |||||| | |||||||||||||| ||||| |||| || ||
Sbjct 238 AAAGGTGTAACAGAGGACCTGAAAG-TGAGAACGAAACAAACGACTGAAAAGCTTTACAA 296
Query 515 GCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAAGTGT 574
||||| | |||| || ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 297 GCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCCAAAAAGGTCTCTTCAAGTGT 356
Query 575 GAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAAAGGA 634
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 357 GAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAAGGA 416
Query 635 GGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAACAGCA 694
|||||||||||||||||| || |||||||||||| || || || |||||| ||| | |
Sbjct 417 GGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAG--AAA-A--A 471
Query 695 GCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAAG-CA 753
|||||||| ||| |||||||||| | | |||||||||||| ||||||||||||||| |
Sbjct 472 -CAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTCAAGTC- 529
Query 754 TTTCTTCACCAAAAATATCCGAGGCG-TTT-CA--C------AAG-C---CTC-TTGACT 798
||||||||||||| ||||||||| | ||| || | ||| | | | |||| |
Sbjct 530 TTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTTTGA-T 588
Query 799 -TTGCAAAG-AAGGGACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTA-AAA 855
| | |||| || | |||||||||||| ||||| || || ||||| |||||||||| |||
Sbjct 589 ATAGTAAAGCAA-GCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTAGAAA 647
Query 856 GGAAGCACCTGGAGTATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGG 915
||| |||||| |||||||||| |||||||| || ||||||||||||| ||||| |
Sbjct 648 -AAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAACAG 706
Query 916 AGATAGTGATTACGCCAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAATCCTTAAGAG 975
|||| ||| |||||| ||||||||||||||||| |||| |||| ||||||||||| ||||
Sbjct 707 AGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTAGAG 766
Query 976 AAAAGATGCAAGGTTATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTA 1035
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 767 AAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGCGGAATGAGTGAGCCTGTTGTCA 826
Query 1036 ACAAGAGCCAAGAGATTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGA 1095
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 827 ACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAATCCAA 886
Query 1096 TTGTTCACAAGATTCAGGACATGAATGAGAAGATCTTTGA-GGAAACAGGTTCTGCATCG 1154
|||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||
Sbjct 887 TTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTT-GAAGGAAACAGATTCTGCATCA 945
Query 1155 ACTTACAAAGAGATACGTC-GCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGTAGA 1213
||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||| |||
Sbjct 946 ACTTACAAAGAGATACG-CAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCAGA 1004
Query 1214 AATTCAGGAAGCCATCAGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTT 1273
|||| |||||| ||||| |||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 1005 AATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACCTT 1064
Query 1274 GAAGAAGTATTGCAGCAAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTCCA 1333
|||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||
Sbjct 1065 GAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTACCA 1124
Query 1334 GAGTCATGGCTATT-TTTTCGATCACAAGCTTCTGCATGTATCTGAAGT-TGAAATTAAA 1391
| |||||| | | |||||||| |||||||||||||| |||||||||| | | ||
Sbjct 1125 AACTCATGG-TGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTCAGTTTCT- 1182
Query 1392 GAGACAAAGATGATGGGA-ACTTCTCCAGTAATCATCA-TCAGGTTCCAAACGCAAGAAA 1449
| |||||||||||||||| | ||| ||| |||||||| | || ||||||||||||||||
Sbjct 1183 GTGACAAAGATGATGGGAGA-TTCCCCAATAATCATCGCTAAG-TTCCAAACGCAAGAAA 1240
Query 1450 TCTTCTGCGTTCGCGACCAGAATGGA-AACATCAAAGAAGGAGGCCAGGACACGATACAC 1508
||| ||||||||| ||| |||||||| || ||| ||||||| || |||||||||||||||
Sbjct 1241 TCTACTGCGTTCGTGACGAGAATGGAGAA-ATCCAAGAAGGTGGGCAGGACACGATACAC 1299
Query 1509 ACGGTGTACTACGATTGGGCAATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCG 1568
||||||||| | || ||||||||||||||||||||| || |||| |||||||| |||||
Sbjct 1300 ACGGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCT 1359
Query 1569 ATTTATCCCATTTGGAGGCTCAGAGAAATGCTG-AGAGCGGGTGTTCAAGCTCTCATTTA 1627
|||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||
Sbjct 1360 ATTTATCCCATTTGGAGGCTCAGAGAGATG-TGTAGAAATGGTGTTCAAGCTCTCATTTA 1418
Query 1628 A 1628
|
Sbjct 1419 A 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5