BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482583 Length=1872 Score E Sequences producing significant alignments: (Bits) Value AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner m... 2593 0.0 AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner m... 1471 0.0 > AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner membrane subunit 44-2 | chr2:15144836-15148131 REVERSE LENGTH=1929 Length=1929 Score = 2593 bits (1404), Expect = 0.0 Identities = 1743/1897 (92%), Gaps = 62/1897 (3%) Strand=Plus/Plus Query 1 AAATGGTATCGACAGAAACCTCTCTAGGG------C--TTTAAGGCAACACTCCTGTCTT 52 |||||||||||| |||||||||||||||| | |||||||||| ||| ||||||| Sbjct 1 AAATGGTATCGAGAGAAACCTCTCTAGGGCTTTAACAGTTTAAGGCAA-ACTTCTGTCTT 59 Query 53 CTGGGTTTGGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCttt-ttttttCAATA 111 || | |||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 60 CT--G---GGTTTGGTTTGTTTCTCAAGGAAAAATTTCAACTTTCTTTCTTATTTCAGTA 114 Query 112 AACCAAAGATATGTTTTCAATCTTAATCTGATTCTTTCTCGCAGCGGCT-A----A-T-T 164 ||| | ||||||||||||||||| ||||||||||||||||||||||||| | | | | Sbjct 115 AACGAGAGATATGTTTTCAATCTCAATCTGATTCTTTCTCGCAGCGGCTAATTCTAGTGT 174 Query 165 --C---------CTCTGTTTCTTCAAAGTTTA-TTCTAATAAAAAATCACTACGAAGGTT 212 | ||||||||||||||| |||| |||| | ||| ||||||||||| || Sbjct 175 CGCTAATAGGGTCTCTGTTTCTTCAAA-TTTAGTTCT--T-TAAATTCACTACGAAGATT 230 Query 213 GTTGTAATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTC 272 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 231 TTTGTTATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTCTC 290 Query 273 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGGCTTCTGTC-GGGAAATGG 331 ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct 291 CAGCAATTGGTGCACCAACGGAGAGTGGGCGCAAGACTAGGTCTTCT-TCAGGGAAATGG 349 Query 332 GTATGCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGA 391 || |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 350 GTTTGCGAGTCATCGACGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAGATTAGAGGAGA 409 Query 392 AGCTGATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGA-G 450 ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || | Sbjct 410 AGCTGATAGCAATCCTGAATTTCAAAAGACAGTGAAGGAGTTCAAGGAAAGAGCA-GAGG 468 Query 451 AGTTGAAAGATATTAGAGAGGACTTGAAAGCTAGAACGAAACAAACTACTGAGCAGCTGT 510 ||||| ||| | ||| |||||||||||||| |||||||||||||||||||||| || ||| Sbjct 469 AGTTGCAAGGTGTTAAAGAGGACTTGAAAGTTAGAACGAAACAAACTACTGAGAAGTTGT 528 Query 511 ATAAGCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 570 |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 ATAAACAAGGTCAAGGCGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAA 588 Query 571 GTGTGAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAA 630 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 589 GTGTGAAAGACAAGTTCTCAGCAGCTACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGTA 648 Query 631 AGGAGGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 690 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 649 AGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAGGAACCACTGAAGGAGAAAAAC 708 Query 691 AGCAGCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAA 750 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 709 AGCAGCAGCAATCTGGTTCTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCCA 768 Query 751 GCATTTCTTCACCAAAAATATCCGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 810 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 769 GCATTTCTTCACCAAAACTATCTGAGGCGTTTCACAAGCCTCTTGACTTTGCAAAGAAGG 828 Query 811 GACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 870 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 829 GACTTGACATTGTAAAGGATGAATTGCGTGGAAACCCATCTAAAAGGAAGCACCTGGAGT 888 Query 871 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGGAGATAGTGATTACGC 930 ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| || Sbjct 889 ATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACGAGAACGGAGATGGTAATTATGC 948 Query 931 CAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAATCCTTAAGAGAAAAGATGCAAGGTT 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 949 CAACAAAACAGTCTAAGTGGCAAAAAAAATGGGAATCCTTAAGAGAAAAGATGCAAGGCT 1008 Query 991 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTAACAAGAGCCAAGAGA 1050 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1009 ATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCAGTTGTCAACAAGAGCCAAGAGA 1068 Query 1051 TTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1110 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1069 TTGCAGAAGATGTGAGGGAAAAGTGGGAAACCAGTGATAATCCGATTGTTCACAAGATTC 1128 Query 1111 AGGACATGAATGAGAAGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAAGAGATAC 1170 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1129 AGGACATGAATGAGAGGATCTTTGAGGAAACAGGTTCTGCATCGACTTACAAGGAGATCC 1188 Query 1171 GTCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGT-AGAAATTCAGGAAGCCATC 1229 | |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 1189 GCCGCCGAGATCCATCATTCTCCTTGCCGGACTTTGTT-TCAGAAATTCAGGAAGCCATC 1247 Query 1230 AGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTTGAAGAAGTATTGCAGC 1289 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1248 AGACCGGTCTTGAATGCATATAGTAAGGGAGATGCTAAGACCTTGAAGAAGTATTGCAGC 1307 Query 1290 AAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTC-CAGAGTCATGGCTATTT 1348 |||||||||||||||||||| ||||||||||||||||||||| | |||||| || ||||| Sbjct 1308 AAGGAATTGATTGAACGGTGTACGGCAGAGCACAGAGCTTTCAC-GAGTCAAGGTTATTT 1366 Query 1349 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGAAATTAAAGAGACAAAGATGATGGG 1408 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1367 TTTCGATCACAAGCTTCTGCATGTATCTGAAGTTGATATTCAAGAGACAAAGATGATGGG 1426 Query 1409 AACTTCTCCAGTAATCATCATCAGGTTCCAAACGCAAGAAATCTTCTGCGTTCGCGACCA 1468 |||| |||||||||||||| ||||||||||||||||||||||||||||||| || || || Sbjct 1427 AACTACTCCAGTAATCATCGTCAGGTTCCAAACGCAAGAAATCTTCTGCGTCCGTGATCA 1486 Query 1469 GAATGGAAACATCAAAGAAGGAGGCCAGGACACGATACACACGGTGTACTACGATTGGGC 1528 | ||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1487 GGATGGAAAAATCAAAGAAGGAGGCCAGGACACAATACACACAGTGTACTACGACTGGGC 1546 Query 1529 AATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCGATTTATCCCATTTGGAGGCT 1588 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1547 TATGCAACAAGTGGATGCAGCAGAGTTAGGGGAAGATGCGATTTATCCCATTTGGAGGCT 1606 Query 1589 CAGAGAAATGCTGAGAGCGGGTGTTCAAGCTCTCATTTAAATCTTCATCATCTTTTAACT 1648 |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1607 CAGAGAGATGTTGAGAGCGGGTGTTCAAGCTCTCATTTAATTCTTCATCATCTTTTAACT 1666 Query 1649 TTATAATAAGCTAAGCC-TCTCTCTTTGCAGTGTACCATT-ATT-TACTCAATCTTGT-- 1703 | ||||||||||||||| |||||||||||| |||||||| | | ||| || | || | Sbjct 1667 T-ATAATAAGCTAAGCCCTCTCTCTTTGCAATGTACCATGCAATGTAC-CATTATT-TAC 1723 Query 1704 TCAC--TCTTGA--ACTATATATAtttttttttttGGTTTTCTTCTTCTCTCTGGAAGGA 1759 ||| ||||| ||| | || ||||||||||| |||||||||| |||| ||||||| Sbjct 1724 TCAAAATCTTGTTCACTCGAGAT-TTTTTTTTTTTCGTTTTCTTCT-CTCT--GGAAGGA 1779 Query 1760 GTGGGTTCCCATGGTTCCGGGGAATAAGTTTTGACAAATATATAAATAGATCTCAAGTCT 1819 ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1780 GTGGGTTCCCATGTTTCAGGGGAATAAGTTTTGACAAATATATAAATACATCTCAAGTCT 1839 Query 1820 TTTTCAAGTTTAATGAAGTTTATTGTTTTGTTTGTAT 1856 |||||||||||| ||||||| ||||||||||||||| Sbjct 1840 TTTTCAAGTTTAGCGAAGTTTGTTGTTTTGTTTGTAT 1876 > AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner membrane subunit 44-1 | chr2:8836018-8838598 REVERSE LENGTH=1419 Length=1419 Score = 1471 bits (796), Expect = 0.0 Identities = 1235/1441 (86%), Gaps = 53/1441 (4%) Strand=Plus/Plus Query 219 ATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTTTCCAG-CA 277 ||||||| ||||||| | |||||||||||||||||||||||||||||||||| | | || Sbjct 1 ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTAC-GTCA 59 Query 278 ATTGGTGCACCAACGGAGAGTGGGCGCAAGACT-AGGGCTTCTGT-CGGGAAATGGGTAT 335 | | | |||||||| |||| ||||||| | || | |||| | | | | ||||||| Sbjct 60 ACTATTCCACCAACGAAGAGCAAACGCAAGA-TCAGAGTTTCT-TCCTGCTATTGGGTAT 117 Query 336 GCGAGTCATCGCCGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAAATTAGAGGAGAAGCT 395 |||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||| Sbjct 118 ACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAAGCT 177 Query 396 GATAGCAATCCTGAATTTCAAAAAACAGTCAAGGAGTTCAAGGAAAGAGCAGGAGAGTTG 455 ||||||||||||||||| ||| |||||| |||||| ||||||||||| ||| |||||| Sbjct 178 CATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAGTTT 237 Query 456 AAAGATATTAGAGAGGACTTGAAAGCT-AGAACGAAACAAACTACTGAGCAGCTGTATAA 514 |||| | | | ||||||| |||||| | |||||||||||||| ||||| |||| || || Sbjct 238 AAAGGTGTAACAGAGGACCTGAAAG-TGAGAACGAAACAAACGACTGAAAAGCTTTACAA 296 Query 515 GCAAGGTCATGGAGTCTGGACGGAGGCTGAATCTGTGGCCAAAAAGGTCTCTTCAAGTGT 574 ||||| | |||| || ||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 297 GCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCCAAAAAGGTCTCTTCAAGTGT 356 Query 575 GAAAGACAAGTTCTCAGCAGCCACAGAAGAGGTCAAGGAGTCATTCAAGCTCGGAAAGGA 634 |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 357 GAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAAGGA 416 Query 635 GGAGAATGCAGAGTCAGCAAGCTCATCAGGCACAGGAACCACTGAAGGAGAAAAACAGCA 694 |||||||||||||||||| || |||||||||||| || || || |||||| ||| | | Sbjct 417 GGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAG--AAA-A--A 471 Query 695 GCAGCAATCTGGTACTACGGAGGAGCAAGATACATTTTTTGGAAAATTCAAGTCAAG-CA 753 |||||||| ||| |||||||||| | | |||||||||||| ||||||||||||||| | Sbjct 472 -CAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTCAAGTC- 529 Query 754 TTTCTTCACCAAAAATATCCGAGGCG-TTT-CA--C------AAG-C---CTC-TTGACT 798 ||||||||||||| ||||||||| | ||| || | ||| | | | |||| | Sbjct 530 TTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTTTGA-T 588 Query 799 -TTGCAAAG-AAGGGACTTGACATTGTAAAGGAGGAATTGCGTGGAAACCCATCTA-AAA 855 | | |||| || | |||||||||||| ||||| || || ||||| |||||||||| ||| Sbjct 589 ATAGTAAAGCAA-GCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTAGAAA 647 Query 856 GGAAGCACCTGGAGTATACACCTCCGCCGCCATTTACAGGTGAGAGAAGTACAAGAACGG 915 ||| |||||| |||||||||| |||||||| || ||||||||||||| ||||| | Sbjct 648 -AAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAACAG 706 Query 916 AGATAGTGATTACGCCAACAAAACAGTCTAAGTGGCaaaaaaaaTGGGAATCCTTAAGAG 975 |||| ||| |||||| ||||||||||||||||| |||| |||| ||||||||||| |||| Sbjct 707 AGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTAGAG 766 Query 976 AAAAGATGCAAGGTTATCCTGTATTTAAACGTCTAAGCGGGATGAGTGAGCCTGTTGTTA 1035 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | Sbjct 767 AAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGCGGAATGAGTGAGCCTGTTGTCA 826 Query 1036 ACAAGAGCCAAGAGATTGCAGAAGATGTGATGGAAAAATGGGAAACCAGTGATAATCCGA 1095 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct 827 ACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAATCCAA 886 Query 1096 TTGTTCACAAGATTCAGGACATGAATGAGAAGATCTTTGA-GGAAACAGGTTCTGCATCG 1154 |||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||| Sbjct 887 TTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTT-GAAGGAAACAGATTCTGCATCA 945 Query 1155 ACTTACAAAGAGATACGTC-GCCGAGATCCATCATTCTCCTTGCCGGACTTTGCTGTAGA 1213 ||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||| ||| Sbjct 946 ACTTACAAAGAGATACG-CAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCAGA 1004 Query 1214 AATTCAGGAAGCCATCAGACCAGTCTTGAATGCATATAGTAAGGGAGATGCTGAGACCTT 1273 |||| |||||| ||||| |||||||||||||||||| ||| ||||||||| ||||||||| Sbjct 1005 AATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACCTT 1064 Query 1274 GAAGAAGTATTGCAGCAAGGAATTGATTGAACGGTGCACGGCAGAGCACAGAGCTTTCCA 1333 |||||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||| Sbjct 1065 GAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTACCA 1124 Query 1334 GAGTCATGGCTATT-TTTTCGATCACAAGCTTCTGCATGTATCTGAAGT-TGAAATTAAA 1391 | |||||| | | |||||||| |||||||||||||| |||||||||| | | || Sbjct 1125 AACTCATGG-TGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTCAGTTTCT- 1182 Query 1392 GAGACAAAGATGATGGGA-ACTTCTCCAGTAATCATCA-TCAGGTTCCAAACGCAAGAAA 1449 | |||||||||||||||| | ||| ||| |||||||| | || |||||||||||||||| Sbjct 1183 GTGACAAAGATGATGGGAGA-TTCCCCAATAATCATCGCTAAG-TTCCAAACGCAAGAAA 1240 Query 1450 TCTTCTGCGTTCGCGACCAGAATGGA-AACATCAAAGAAGGAGGCCAGGACACGATACAC 1508 ||| ||||||||| ||| |||||||| || ||| ||||||| || ||||||||||||||| Sbjct 1241 TCTACTGCGTTCGTGACGAGAATGGAGAA-ATCCAAGAAGGTGGGCAGGACACGATACAC 1299 Query 1509 ACGGTGTACTACGATTGGGCAATGCAACAAGTGGAGGCAGCAGAGTTAGGGGAGGATGCG 1568 ||||||||| | || ||||||||||||||||||||| || |||| |||||||| ||||| Sbjct 1300 ACGGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCT 1359 Query 1569 ATTTATCCCATTTGGAGGCTCAGAGAAATGCTG-AGAGCGGGTGTTCAAGCTCTCATTTA 1627 |||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||| Sbjct 1360 ATTTATCCCATTTGGAGGCTCAGAGAGATG-TGTAGAAATGGTGTTCAAGCTCTCATTTA 1418 Query 1628 A 1628 | Sbjct 1419 A 1419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92670206070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5