BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482585
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36090.1 | Symbols: | F-box family protein | chr2:15158561-... 1530 0.0
> AT2G36090.1 | Symbols: | F-box family protein | chr2:15158561-15159639
FORWARD LENGTH=1079
Length=1079
Score = 1530 bits (828), Expect = 0.0
Identities = 922/968 (95%), Gaps = 4/968 (0%)
Strand=Plus/Plus
Query 72 CCTCCTCCTCCTCTACCACCGTAACAGATTTAATCTCCACCGTCCATCATGACATCATAG 131
||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 87 CCTTCTCCCCCTCTACCACCGTAACAGATTTAATCTCCACCGTCCATGACGACATCATAG 146
Query 132 AGTCTCACATCTTGACACGTCTCGACGGCGCAACCTTAGCCTCCGTCTCTTGCGCCTCCT 191
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 147 AGTCTCACATCTTGACACGTCTCGACGGCGCAACCTTAGCATCCGTCTCTTGCGCCTCCT 206
Query 192 CATATCTTCACCATCTCGCTTCCAATGAGATCCTCTGGTCCAAAATATGCCGGTCCACGT 251
|| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 207 CACATCTTCATCATCTCGCTTCCAATGAGATCCTCTGGTCCAAAATCTGCCGATCCACGT 266
Query 252 GGCCTTCTTGCTCCGATGGTTCTCGTTCTTTTTTCTCCGACGCTTATTCTATGGTTGAAA 311
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 267 GGCCTTCTTGCTCCGGTGGTTCTCGTTCTTTCTTCTCCGACGCTTATTCTATGGTGGAAA 326
Query 312 CCGCCGGTTCAGTTTCTGATCTCGACCGTCCGTTTCCCGAATTGATCTCCGCCGTGGATC 371
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 327 CCGCCGGTACAGTCTCTGATCTCGACCGTCCGTTTCCGGAATTGATCTCCGCCGTGGATC 386
Query 372 TTCACTACAAAGGGAAATTGATTTTCAGTAGAGTCGTGAAGACGGACACTACGACGGCGT 431
||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 387 TTCACTACAGAGGGAAGTTGATTTTTAGTAGAGTCGTGAAGACGGAGACTACGACGGCGT 446
Query 432 GGTTTAAGAGCTCGCCGTTGAGGATTGATCTGGTGGATACGAAGGATACGGTGGCGACGC 491
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 447 GGTTTAAGAGTTCGCCGTTGAGGATTGATCTGGTGGATACAAAGGATACGGTGGCGACGC 506
Query 492 CGATTAAGAGAAGACGGAGGACGGAAGACACGTGTCGTGATCTAGAGAAGGATTTGACTT 551
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CGATTAAGAGAAGACAGAGGACGGAAGACACGTGTCGTGATCTAGAGAAGGATTTGACTT 566
Query 552 TAAGCTGGATCGTGATTGATCCAATCGGGAAACGAGCGGCGAATCTATCGAGTCACCGGC 611
| |||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 567 TGAGCTGGATCGTGATTGATCCGATCGGGAAACGAGCGGCGAATATTTCGAGTCACCGGC 626
Query 612 CGGTGTCGGTGCAGAGGAACTGGATAAGCGGAGAAGTGGAGGCGCAATTCGCGACGGTGG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 CGGTGTCGGTGCAGAGGAACTGGATAAGCGGAGAAGTGGAGGCGCAATTCGCGACGGTGG 686
Query 672 TGGAGACGGTGGAGTGTGTGATCACGGTGGTCACGTGCGGAGAGGAGGAGATGCACGTGA 731
||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 687 TGGGGGCGGTGGAGTGTGTGATCACGGTGGTCACGTGCGGTGAGGAGGAGATGCACGTGA 746
Query 732 GGGAAGTGAGTCTCAAGGTAGAGAAGATGGAGGGAACGCATTTGAACGGGAGGGACAGTT 791
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 747 GGGAAGTGAGTCTCAAGGTAGAGAAGATGGAGGGAACGCATTTAAACGGGAGGGACAGTT 806
Query 792 TGGTCATTTTGAGGAGTGTCATGGAGGGTAAAAGGGTAAATGgaagaagaagagaagtag 851
|||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 807 TGGTTATTTTAAGGAGTGTCATGGAGGGTAAAAGGGTAAATGGAAGTAGGAGGGAAGTAG 866
Query 852 aatcgaaga-gaagacacgaagagtttatggagaagaagagagaggtgaaggagaagaag 910
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 867 AATCGAAGAAGA-GACACGAAGAGTTTATGGAGAAGAAGAGAGAGATGAAGGAGAAGAAG 925
Query 911 atgagggtagaaTCGGTAtttgacattttgtctgtagcttttgggattttaggctttgtg 970
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 926 ATGAGGGTAGAATCGGTATTTGACATTTTGACTGTAGCTTTTGGTATTTTAGGCTTTGTG 985
Query 971 tctt-ttgttgtgctttgtctttgGAGAACCTCTATATGAATCGGAAGCTTTTAAGTTAA 1029
| | |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 986 T-TGCTTGTTGTGTTTTGTCTTTGGAGAACCTCTATATGAATCAGAAGCTTTTAAGTTGA 1044
Query 1030 ACCAAAAG 1037
||||||||
Sbjct 1045 ACCAAAAG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5