BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482586
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36100.1 | Symbols: | Uncharacterised protein family (UPF04... 1158 0.0
> AT2G36100.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:15159591-15160750 REVERSE LENGTH=855
Length=855
Score = 1158 bits (627), Expect = 0.0
Identities = 768/832 (92%), Gaps = 25/832 (3%)
Strand=Plus/Plus
Query 1 ACACAAAGAACACACTTTCTCTTTCTTTTAAACCCCAATTGCAAGAGAAAATGGCGAAAG 60
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 32 ACACAAAGCACACACTTTTTCTTTCTTTTAAACCCCAATTGCAAGAGAAAATGGCGAAAG 91
Query 61 AGTCCACCACCATTGACGTCGGCGAGCCAAGCACTGTCACCAAAAGTTCAAGCCATGTCG 120
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 92 AGTCCACCACCATCGACGTCGGCGAGCCAAGCACTGTTACCAAAAGTTCAAGCCATGTCG 151
Query 121 T---------GAAGAAGAAGGGCTTCGTGGCAGCCGCCGCAGGAGGTGGTGCCAAGAGAG 171
| ||||||||||||||| ||||||| |||| || ||||||||||||||||||
Sbjct 152 TAAAGGACGCGAAGAAGAAGGGCTTTGTGGCAGTCGCCTCAAGAGGTGGTGCCAAGAGAG 211
Query 172 GTTTAGCCATATTCGATTTCCTCCTCCGTTTGGCGGCCATAGGAGTCACCATCGGAGCTG 231
|||| || |||||||||||||||||||||||||||||||||| |||||| || || ||||
Sbjct 212 GTTTGGCTATATTCGATTTCCTCCTCCGTTTGGCGGCCATAGCAGTCACTATTGGGGCTG 271
Query 232 CCTCTGTCATGTACACCGCCCAGGAGACTCTTCCCTTCTTTACTCAGTTCCTCCAGTTCC 291
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 272 CCTCTGTCATGTACACCGCCGAGGAAACTCTTCCCTTCTTTACTCAGTTCCTCCAGTTCC 331
Query 292 AAGCCGGTTACGATGACCTTCCTGCATTTCAGTACTTTGTGATAGCCGTAGCCATAGTCG 351
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 332 AAGCCGGTTACGATGACCTTCCTGCGTTTCAGTACTTTGTGATAGCCGTAGCCGTAGTCG 391
Query 352 CTAGCTATCTCGTCCTTTCACTTCCATTCTCCATCGTAACTATTGTCCGTCCAC-TCGCT 410
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||
Sbjct 392 CTAGCTATCTCGTCCTTTCACTTCCATTCTCCATCGTATCCATTGTCCGTCCACAT-GCT 450
Query 411 GTCGCGCCTCGGCTGATCCTCCTCATCTT-CGATACTTTGGTCGTGACGCTCAACACATC 469
|||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 451 GTCGCGCCCCGGCTGATCCTCCTCAT-TTGCGATACTCTGGTCGTGACGCTCAACACATC 509
Query 470 AGCAGCAGCAGCCGCAGCATCAATCGTCTACCTTGCACACAACGGCAACCAAAGCACCAA 529
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 510 AGCAGCAGCAGCGGCAGCATCAATCACCTACCTTGCACACAACGGCAACCAAAGCACCAA 569
Query 530 CTGGCTCCCTATCTGTCAGCAGTTTGGAGACTTTTGCCAAAACGTGAGCACCGCTGTTGT 589
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 570 CTGGCTCCCTATCTGTCAGCAGTTTGGAGACTTCTGCCAGAACGTTAGCACCGCGGTTGT 629
Query 590 AGCAGCTTCTATCGCGATTCTCTTCTTCATTGTTCTCATCATCATCTCCGCCATCGCCCT 649
|| | |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 630 GGCTGATTCTATCGCGATTCTCTTCTTCATCGTTCTTATCATCATCTCAGCCATCGCCCT 689
Query 650 CAAGAGGCACTGATTTCATCTTTTTTAAGTGTCAAGATCGTAATGTACTTGTTGTATATG 709
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 690 CAAGAGGCATTGATTTCATCTTT---AAGTGTCAAGATCGTAATGTACTTGTTGTATATG 746
Query 710 TTTGTGGCTTTGTGTAACATGACAATTGGTATTATTGTGTGAAAATGTAATTGAAGTTGT 769
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 747 TTTGTGGCTTTGTGTAACATGAGAATTGGTATTATTGTGTGAAAATGTAATTGAAGTTGT 806
Query 770 TT-ATGTTTTTTAAAAGAAATTTGACTTTT-----GGTTTAACTTAAAAGCT 815
|| ||||||| ||| |||||||| ||||| |||| ||||||||||||
Sbjct 807 TTTATGTTTT--AAA-GAAATTTGTCTTTTCTTTTGGTTCAACTTAAAAGCT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5