BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482587
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36120.1 | Symbols: DOT1 | Glycine-rich protein family | chr... 1467 0.0
> AT2G36120.1 | Symbols: DOT1 | Glycine-rich protein family | chr2:15165437-15166465
FORWARD LENGTH=1029
Length=1029
Score = 1467 bits (794), Expect = 0.0
Identities = 965/1043 (93%), Gaps = 30/1043 (3%)
Strand=Plus/Plus
Query 1 ACAACTAAATCTTAAGTAGAAAGAGTG-AACATGGCTAGTCACAAAAATCTCTTCTTTCT 59
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ACAACTAAATCTTAAGTAGAAAGAGTGAAACATGGCTAATCACAAAAATCTCTTCTTTCT 60
Query 60 ATGTTTCATAATAGGTTTAGGGTTATGTTCTGCAAGACGAGCACTTCTCTCCTCCTCTGA 119
||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 61 ATGTTTCTTAATAGGTTTAGGGTTATGTTCTGCTAGACGAGCACTACTCTCCTCCTCTGA 120
Query 120 ATCCGAGGCTGAAGTCGCTGCCTATGGCGTGAAAAGTGGTTTAAGTGTC-GGTGTTGGTG 178
||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||
Sbjct 121 ATCCGAGGCTGAAGTCGCTGCCTATGGCGTGAATAGTGGTTTAAGTG-CTGGTCTTGGTG 179
Query 179 TTGGTATaggtggtggtgctggaggaggatctggttacggaggtggaagcggtgaaggtg 238
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTGGTATTGGTGGTGGTCCTGGAGGAGGATCTGGTTACGGAGGTGGAAGCGGTGAAGGCG 239
Query 239 gtggagctggtgggcatggtgagggacatattggtggaggcggaggtggtggacatggtg 298
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 GTGGAGCTGGTGGGCATGGCGAGGGACATATTGGTGGGGGCGGAGGTGGTGGACATGGTG 299
Query 299 gtggtgctggcggaggaggtggtggtggtcctggaggaggctacggaggtggaagcggtg 358
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 300 GTGGTGCTGGCGGAGGAGGAGGTGGTGGCCCTGGAGGAGGCTACGGAGGTGGAAGCGGTG 359
Query 359 aaggtggtggagctggaTACGGAGGCGGAGAAGCTGGTGGGCATGGTGGAGGTGGAGGAA 418
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 AAGGTGGTGGAGCTGGATACGGAGGCGGAGAAGCTGGTGGGCATGGCGGAGGTGGAGGAG 419
Query 419 GCGGAGCaggcggcggtggaggaggtggcggtg---cacatggtggagggtacggtggtg 475
|||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||
Sbjct 420 GCGGAGCAGGCGGCGGTGGAGGTGGTGGTGGTGGTGCACATGGTGGAGGATACGGTGGTG 479
Query 476 gacaaggtggtggtgctggaggaggatatggaggtggaggtgcaggtgccggtggatatg 535
||||||||| ||||||||||||||||||||||||||||||||| || | || | |||
Sbjct 480 GACAAGGTGCTGGTGCTGGAGGAGGATATGGAGGTGGAGGTGCCGG-G--GG---ACATG 533
Query 536 gaggtggtggaggcggtggaaatggtggtggtggaggaggaggttctggcgaaggaggag 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 534 GAGGTGGTGGAGGCGGTGGAAATGGTGGGGGTGGAGGAGGAGGTTCTGGCGAAGGAGGAG 593
Query 596 ctcatggtggtggtTACGGAGCAGGGggtggagctggagagggatatggtggtggtgcag 655
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 594 CTCATGGTGGTGGTTACGGAGCAGGAGGTGGAGCTGGAGAGGGATACGGTGGTGGTGCTG 653
Query 656 aagctggaggacatggtggaggaggaggagttggtggtggtgccggaggtggaggaggag 715
|||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 654 GAGCTGGTGGACATGGTGGTGGAGGAGGAGGCGGTGGTGGTTCCGGAGGTGGAGGAGGAG 713
Query 716 gtggtggaggtTATGCTGCTGCTTCAGGATATGGTCACGGTGGCGGTGCTGGTGGCGGAG 775
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 714 GAGGTGGAGGTTATGCTGCTGCTTCTGGATACGGTCACGGTGGGGGTGCTGGTGGTGGAG 773
Query 776 AAGGAAGCGGTGGCTATGTACCCTGAAAAAATATCTCTATGGAGCATGACGGCCATTGAG 835
|||||||||||||||||||||| ||||||| ||||| ||||||| | ||||| ||||||
Sbjct 774 AAGGAAGCGGTGGCTATGTACCATGAAAAATTATCTATATGGAGTGTAACGGCAATTGAG 833
Query 836 TGAAGTGTCATATCTCGTAAGGGACTACTATATATAGTTTCAAGATATATAAATGTGGCA 895
||||||||||||||||||||||||||| |||| |||||| ||| |||| |||||||
Sbjct 834 TGAAGTGTCATATCTCGTAAGGGACTA-TATA----GTTTCACGATTTATA--TGTGGCA 886
Query 896 ATAAATAGAGTATTCCTTCGTATAATAAGCCGTTA-AAAGGCGGCTATTGTTGAAGTTTT 954
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 887 ATAAATAGAGTAATCCTTCGTATAATAAGCCGT-AGAAAGGCGGCTATTGTTGAAGTTTT 945
Query 955 TAAATTGTACCA--A----TATTGTTGTAAGCTACTAC---GTGTGTGTCAAGTTTTTAT 1005
|||||||||||| | ||||||||||||||||||| |||||| ||||||||||||
Sbjct 946 TAAATTGTACCACGACCAATATTGTTGTAAGCTACTACTACGTGTGTATCAAGTTTTTAT 1005
Query 1006 AAATGGAGATCATAGTTGTTCCT 1028
||||||| |||||||||||||||
Sbjct 1006 AAATGGAAATCATAGTTGTTCCT 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5