BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482591
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein ... 885 0.0
AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein ... 580 4e-165
> AT2G36160.1 | Symbols: | Ribosomal protein S11 family protein
| chr2:15169818-15171353 FORWARD LENGTH=754
Length=754
Score = 885 bits (479), Expect = 0.0
Identities = 599/654 (92%), Gaps = 19/654 (3%)
Strand=Plus/Plus
Query 1 TGTGTAGGCGGAACTCA-AGAACCAAGAGCCTCTTCCAAATCTGAGTTACTTTTAATCGC 59
||||||||||||||| | ||||||||||||||||| | |||| ||||||| ||||||| |
Sbjct 42 TGTGTAGGCGGAACT-ACAGAACCAAGAGCCTCTTTCTAATCGGAGTTAC-TTTAATCCC 99
Query 60 CTTGAACCATGTCGTCGAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTG 119
||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CTTGAACCA--T-GTCAAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTG 156
Query 120 GACCAAGTGTTCTTGAGGGAGAGCAAGTTTTTGGTGTTGTCCACATCTTTGCATCATTCA 179
||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 157 GACCATCTGTTCGTGAGGGAGAGCAAGTTTTCGGTGTTGTCCACATCTTTGCTTCATTCA 216
Query 180 ACGACACATTCATTCATGTTACTGATTTGTCTGGACGTGAAACACTTGTCCGTATCACTG 239
||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 217 ACGACACTTTCATTCATGTTACTGATTTGTCTGGTCGTGAAACTCTTGTCCGTATCACCG 276
Query 240 GTGGAATGAAGGTGAAAGCTGATAGGGATGAGTCCTCACCTTATGCAGCTATGCTTGCTG 299
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 277 GTGGAATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCTTACGCAGCTATGCTTGCAG 336
Query 300 CACAGGATGTCGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATGCATGTGAAGCTCC 359
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 337 CACAGGATGTTGCTCAGCGATGCAAGGAACTTGGTATCACTGCCATGCATGTGAAGCTCC 396
Query 360 GTGCCACCGGTGGAAACAAGACCAAAACACCTGGTCCTGGAGCTCAGTCTGCTCTTAGAG 419
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 397 GTGCCACAGGTGGAAACAAGACCAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTAGAG 456
Query 420 CTCTTGCTCGTTCTGGCATGAAAATAGGACGTATTGAGGATGTTACTCCCATCCCAACAG 479
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 457 CCCTTGCTCGTTCCGGCATGAAAATAGGCCGTATTGAGGATGTTACTCCCATCCCAACAG 516
Query 480 ACAGTACCCGCCGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTTTT-C-CGCCTTAT 537
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| || |
Sbjct 517 ACAGTACCCGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTTTTTCTCGCATTGT 576
Query 538 TGGATATGTCTTT-TATTTAGCTCCATGTGTTTCATTTTGTCAGAACAATTTTAT-TTTG 595
|||| || ||| |||||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 577 GGGAT--GT-TTTCTATTTAGCTCCATGTGTTTCATTTTGTCTGAACCATTTT-TGTTTG 632
Query 596 GAGTTTGTTAGATTGTGGAAGAGTTTTGGAGTTGAATACTTTTTGTTAATTTAA 649
| |||||||||| |||||| ||||||||| || |||||||||||||||||
Sbjct 633 ---T--GTTAGATTGTTGAAGAGCTTTGGAGTTTAACACTTTTTGTTAATTTAA 681
> AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein
| chr3:19503223-19504973 FORWARD LENGTH=826
Length=826
Score = 580 bits (314), Expect = 4e-165
Identities = 449/513 (88%), Gaps = 14/513 (3%)
Strand=Plus/Plus
Query 73 GTCGAAGAGAAAGACTAAAGAGCCAAAGGTCGATG-TTGTGACTCTTGGACCAAG-TGTT 130
||||||||||||||| |||||||||||||| || | ||||||||||||||| || ||||
Sbjct 104 GTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGA-GAATGTGACTCTTGGACC-AGCTGTT 161
Query 131 CTTGAGGGAGAGCAAGTTTTTGGTGTTGTCCACATCTTTGCATCATTCAACGACACATTC 190
| ||| ||||||||||| ||||| ||||| ||| ||||||| |||||||||||||| |||
Sbjct 162 CGTGAAGGAGAGCAAGTCTTTGGAGTTGTTCACGTCTTTGCTTCATTCAACGACACTTTC 221
Query 191 ATTCATGTTACTGATTTGTCTGGACGTGAAACACTTGTCCGTATCACTGGTGGAATGAAG 250
||||| || ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 222 ATTCACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAG 281
Query 251 GTGAAAGCTGATAGGGATGAGTCCTCACCTTATGCAGCTATGCTTGCTGCACAGGATGTC 310
|||||||| || || |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 282 GTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCTGCTATGCTTGCGGCACAAGATGTT 341
Query 311 GCTCAGCGATGCAAGGAACTTGGAATCACTGCCATGCATGTGAAGCTCCGTGCCACCGGT 370
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 342 GCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAACTCCGTGCCACTGGT 401
Query 371 GGAAACAAGACCAAAACACCTGGTCCTGGAGCTCAGTCTGCTCTTAGAGCTCTTGCTCGT 430
|| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||
Sbjct 402 GGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTAAGAGCCCTTGCCCGT 461
Query 431 TCTGGCATGAAAATAGGACGTATTGAGGATGTTACTCCCATCCCAACAGACAGTACCCGC 490
|||||||||||||| || || ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 462 TCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAATCCCAACCGACAGTACCCGC 521
Query 491 CGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGAGTT-TTCCGCCT-TA-TTGGATATGTC 547
|||||||||| ||||||||||| |||||||||||| || |||| | |||||| | |
Sbjct 522 AGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGAGTTATTTGGCCTCTCGTTGGATCTC-C 580
Query 548 TTTTATTTAGCT--C-CATGTGTTTCATTTTGT 577
|| || ||||| | || |||||||||||||
Sbjct 581 TT--ATGTAGCTTTCTCAA-TGTTTCATTTTGT 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5