BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482594
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36220.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1555 0.0
> AT2G36220.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G52710.1);
Has 74 Blast hits to 74 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15192480-15193698
FORWARD LENGTH=1219
Length=1219
Score = 1555 bits (842), Expect = 0.0
Identities = 1006/1084 (93%), Gaps = 16/1084 (1%)
Strand=Plus/Plus
Query 31 CTCTCTATGCCACAAGTCGATCTAGAAGCCTTTGTTTCTTCAGTATGTGTCGGTGGCTCC 90
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 71 CTCTCTATGCCACAAGTCGATATAGAAGCCTTTGTTTCTTCAGTATGCATCGGTGGCTCC 130
Query 91 GATCACCGGAAGATCGCATGCGAAACCCTCGCCGACGAC-CAGACGATCCCACCTTATTA 149
|| ||||| ||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 131 GACCACCGCAAGATCGTATGCGAAACCCTCGCCGACGACTCA-ACGATCCCACCTTATTA 189
Query 150 CAACAACTCCGCCGTGAGTCCGAGTGATTTTCCACCGGAATCTTATTTCTTGTCAAAAGA 209
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 190 CAACAACTCCGCCGTTAGTCCGAGTGATTTCCCACCGGAATCTTATTTCTTGTCAAACGA 249
Query 210 TGCTCAGCTCGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGATTCACAGAGAGG 269
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 250 TGCTCAGCTAGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGACTCACAAAAAGG 309
Query 270 AAACTCTGGGATTCTCAATTCCAATCCAAACTCGAATCCAAGCTCGCAACGGTTTTTACT 329
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 310 AAACTCTGGGATTCTCAATTCTAATCCCAACTCGAATCCAAGCTCGCAACGGTTCTTACT 369
Query 330 AAAATCCAAAGCGTCGATCATCGGTTTACCGAAACCTCAGAAAACGTGTTTCAACGAGAC 389
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 370 AAAATCCAAAGCGTCGATCATCGGTTTGCCTAAACCGCAGAAAACGTGTTTCAACGAGGC 429
Query 390 CAAGCAACGGAGACACGAC-GGCAAGAACCGAGTCATCCTGAAACGGGTCGGGTCACGGA 448
|||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| |||
Sbjct 430 AAAGCAACGGAGACACG-CGGGCAAGAACCGGGTCATCTTGAAACGGGTCGGGTCAAGGA 488
Query 449 TAAAAACGGATACTTCGCTTCTTGAACCTTCTTCTCCTATAGTCTCTTGCATCGGTAGAG 508
|||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 489 TAAAGACGGATATTTCGCTTCTGGAACCTTCTTCTCCTAAAGTCTCTTGCATCGGTAGAG 548
Query 509 TGAAATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGAGATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAAC 608
Query 569 CGGCGAACCGGGTTAAGAAATCCGGGTTTATGGCGAGTTTCAGAGCCATCTTCAGGATCA 628
||| ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 609 CGGTAAACCGGGTTAAGAAACCCGGGTTTATGGCGAGTTTCAGAGCTATTTTCAGGATCA 668
Query 629 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGCCAAGTAACACACAGG 688
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |
Sbjct 669 AAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGACGAGAAACACACACG 728
Query 689 ACATCAGGAGCAGGCTTCCGGTGGAAGCTGTTGAGAAGTC-GTCATTCGACGGCGGAGAA 747
||||||||||| | ||||| | |||||||| ||||||||| || ||||||||||||||||
Sbjct 729 ACATCAGGAGCCGACTTCCTGCGGAAGCTGATGAGAAGTCGGT-ATTCGACGGCGGAGAA 787
Query 748 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGAAGAAGAGCGGATTTG 807
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 788 CCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGTAGAAGAGCGGATTTG 847
Query 808 TTGGCTGGTGGAGGATGTTGACGTGGCGCGTGTGACAAGTGTAATACATGTCGGGTCCAG 867
|||| |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||
Sbjct 848 TTGGGTGGTGGAGGATGTTGACGCGGCG-GA-TGACAAGTGTAATACATGTGGGGTCCAG 905
Query 868 TTATCTAGTGTTTTTAAGTCTCAGGGGGAAAGTAGAA-A--TAGTACTTTGGTTGTCTTG 924
|||| ||||||||| ||||| |||||||||||||||| | ||||||||| |||||||||
Sbjct 906 TTATATAGTGTTTT-AAGTCCCAGGGGGAAAGTAGAAGAAATAGTACTTTAGTTGTCTTG 964
Query 925 TCTGAATATTTTG-GTGGTTGTAATTTTTGAAAAGTCGTTGGTGATGACGTGGCAACTGA 983
||||| | ||||| |||| | |||| |||||||||||||||||||||||||| ||||
Sbjct 965 TCTGATTTTTTTGAGTGGAACTCGTTTT-GAAAAGTCGTTGGTGATGACGTGGCAGCTGA 1023
Query 984 TCAACGttttt-ttCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1042
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TCAACGTTTTTATTCAGAAAGAAACACGGCAACGCGAAAGCGGTGATTTCACACCCACCG 1083
Query 1043 CACTGTTTTTGTTTTCTTCTAGTTTCCGTTGTATATAGTT-AGTTTAAATGTTATTATAT 1101
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1084 CACTGTTTTTGTATTCTTCTAGTTTCCGTTGTAAATAGTTCAGTTTAAATGTTATTATAT 1143
Query 1102 TTGT 1105
|||
Sbjct 1144 CTGT 1147
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 AAAATATCAAAAGCTTTCACATTACAAT 28
||||||||||||||||||||||||||||
Sbjct 21 AAAATATCAAAAGCTTTCACATTACAAT 48
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5