BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482600
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36290.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1862 0.0
> AT2G36290.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:15208627-15210845 REVERSE LENGTH=1412
Length=1412
Score = 1862 bits (1008), Expect = 0.0
Identities = 1143/1207 (95%), Gaps = 13/1207 (1%)
Strand=Plus/Plus
Query 1 TAGACCAAACctctctctcttctctcgcttcccagctacttctctctgt--ctctctctc 58
||||||||| | |||||||||||||| |||||||||||||||||||| | | |||||||
Sbjct 6 TAGACCAAA-C-CTCTCTCTTCTCTCACTTCCCAGCTACTTCTCTCTCTCGCGCTCTCTC 63
Query 59 gtttcttTATTGGCAATGGCTACTGGATCAAC-A--GATTCCCCCAGGTCTCCTTCCTCA 115
||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 64 -TTTCTTTTTTGGCAATGGCTACTGGATCAACAACCGATTCCGCCAGGTCTCCTTCCTCA 122
Query 116 GGTGTTCTCCAGAAGTTGTTATTAGTATTCTTTGTATGTATAGCTGCTTCGACTTATAAG 175
||||||||||| ||| |||||||| |||||| ||| ||||||||| |||| ||||||||
Sbjct 123 GGTGTTCTCCAAAAGCTGTTATTACTATTCTCTGTCTGTATAGCTACTTCAACTTATAAA 182
Query 176 GCAATCCAGCCTCCTCC-TCCAAAGCTATGTGGCTCTCCTGATGGTCCATCCATCACAGG 234
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GCAATCCAGCCTCCTCCAT-CAAAGCTATGTGGCTCTCCTGATGGTCCATCCATCACAGG 241
Query 235 ACCAAGGATTAAGCTAAGAGACGGAAGGCATTTGGCTTACAAAGAGCATGGAGTTCCTAG 294
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 242 ACCAAGGATTAAGCTAAGAGACGGAAGGCAGTTAGCTTACAAAGAGCATGGAGTTCCTAG 301
Query 295 AGATGAAGCTACCCATAAAATCGTCGTTGTCCATGGATCTGATAGTTGCAGGCACGATAA 354
|||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 302 AGATGAAGCTACTCATAAAATCATCGTTGTCCATGGATCTGATAGTTGCAGACATGATAA 361
Query 355 TGCTTTCGCAGCTCTACTATCGCCGGATATAAAAGAAGGACTTGGTGTGTATATGGTTTC 414
||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 362 TGCTTTCGCAGCTCTACTATCACCGGATATTAAGGAAGGACTAGGTGTGTATATGGTTTC 421
Query 415 ATTTGATAGACCTGGTTATGCAGAGAGTGATCCTGACCCAAACCGTACTCCTAAAAGCTT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTTGATAGACCTGGTTATGCAGAGAGTGATCCTGACCCAAACCGTACTCCTAAAAGCTT 481
Query 475 GGCTTTGGACATTGAAGAGCTTGCTGATCAGTTGAGTCTAGGAACCAAGTTCTATGTCAT 534
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 482 GGCTTTGGACATTGAAGAGCTTGCTGATCAGTTGAGTCTAGGATCGAAGTTCTATGTCAT 541
Query 535 CGGTTACTCGATGGGAGGACAAGCTACATGGGCATGCCTTAAATACATTCCTCACAGGTT 594
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 542 CGGTTACTCGATGGGAGGACAAGCTACTTGGGCATGCCTTAAATACATTCCTCACAGGTT 601
Query 595 GGCTGGAGTAATGCTTGTTGCTCCAGTGGTGAACTATTGGTGGAAGAACTTTCCATTAGA 654
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 602 GGCTGGAGTAACGCTTGTTGCTCCAGTGGTGAACTATTGGTGGAAGAACTTTCCATCAGA 661
Query 655 CATCTCAACCGAAGCTTTTAACCAACAAGCGAGAAATGACCAGTGGGCGGTTCGTGTTGC 714
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 662 GATCTCAACCGAAGCTTTTAACCAACAAGGGAGAAATGACCAATGGGCGGTTCGTGTTGC 721
Query 715 ACACTATGCTCCTTGGCTTACTCATTGGTGGAACTCCCAGAACTGGTTCCCTGGATCAAG 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 722 ACACTATGCTCCTTGGCTTACTCATTGGTGGAACTCCCAGAGCTGGTTCCCTGGATCAAG 781
Query 775 TGTTGTGGCCCGCAATCTCGGTATGTTGTCCAAATCAGACAAAGAGATCATGTTTAAGCT 834
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 782 TGTTGTGGCTCGCAATCTCGGTATGTTGTCCAAAGCAGACAAAGAGATCATGTTTAAGCT 841
Query 835 CGGTGCTGCAAGGAGGCAACATGAGGCACAAATAAGGCAACAAGGAACACACGAGACATT 894
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGGTGCTGCAAGGAGCCAACATGAGGCACAAATAAGGCAACAAGGAACACACGAGACATT 901
Query 895 GCACCGTGACATGATTGTTGGATTTGGAACTTGGGAATTCGATCCGATGGAGCTCGAGAA 954
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 902 GCACCGTGACATGATTGTTGGATTTGGAACTTGGGAGTTCGATCCAATGGAGCTCGAGAA 961
Query 955 TCTGTTCCCGAACAATGAGGGATCAGTGCACTTGTGGCAGGGAGATGATGATGTACTTGT 1014
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 962 TCTGTTCCCGAACAATGAAGGATCAGTGCACTTGTGGCAGGGAGATGATGATGTGCTTGT 1021
Query 1015 CCCTGTGACTCTGCAACGTTACATTGC-ACAGAAGCTTCCATGGATCCATTACCATGAGA 1073
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 1022 CCCTGTGACTCTGCAACGTTACATTGCGA-AGAAGCTGCCATGGATCCATTACCATGAGA 1080
Query 1074 TTCCTGGAGCCGGACATTTGTTCCCATTTGCTCCAGGTATGGTTAATAACATCGTTAAAA 1133
|||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1081 TTCCTGGAGCAGGGCATTTGTTCCCGTTTGCTCCAGGTATGGTTAATAACATTGTTAAAA 1140
Query 1134 CTCTCTTAACCAATGATGGAGTGAAGAACTAAACTCTTATCTTCTCTCTCAAAAAGATAG 1193
| |||||||||||||||||||||||||| ||||| | ||||||||||||||||| | |
Sbjct 1141 CGCTCTTAACCAATGATGGAGTGAAGAAGTAAACGATG-TCTTCTCTCTCAAAAAGTTGG 1199
Query 1194 CTAGTTT 1200
|||||||
Sbjct 1200 CTAGTTT 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5