BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482601

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36295.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   477    4e-134


> AT2G36295.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:15211718-15212269 
FORWARD LENGTH=552
Length=552

 Score =  477 bits (258),  Expect = 4e-134
 Identities = 349/391 (89%), Gaps = 14/391 (4%)
 Strand=Plus/Plus

Query  1    AAGGATTCTTAAAACGAAAATTATTTCAGAATCAACAATGACACGTTGTGTTGGTTTGGT  60
            ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    AAGGACTCTTAAACCGGAAATTATTTCAAAATCAACAATGACACGTTGTGTTGGTTTGGT  60

Query  61   TAACCGGGGAACAGAGGAAGAGGAGAAACAAGAA-C---C--A---GAACGCGATGGCGA  111
            |||||| |||||||| |||||||||||||||||| |   |  |   |||| |||||||||
Sbjct  61   TAACCGTGGAACAGAAGAAGAGGAGAAACAAGAAGCAAACGAACCTGAACACGATGGCGA  120

Query  112  GGGAAGTAGTGAAGAAGACAGCGAAGATGATCTGTTCGAGATAAACCTGGAGGCCGTTAG  171
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  GGGAAGTAGTGAAGAAGACGGCGAAGATGATCTGTTCGAGATAAACCTGGAGGCCGTCAG  180

Query  172  TGATACGACGACGTCTCCACGGTATGATTGGCAGATATTTCCGGCGAGAACAGGCAGCGT  231
            ||||||| | || ||||||| ||||||||| |||| ||| |||||||||||||| |||||
Sbjct  181  TGATACGGCCACATCTCCACCGTATGATTGCCAGAGATTACCGGCGAGAACAGGTAGCGT  240

Query  232  TTTACTGGCCAACTGTCTATTACCAGCTGCGGATATCTCTTGTGCCGTGCCGGCAACATC  291
            |||||||||||||||||||||||||||||| || ||||||  |||||| |||||||||||
Sbjct  241  TTTACTGGCCAACTGTCTATTACCAGCTGCCGAAATCTCTAATGCCGTACCGGCAACATC  300

Query  292  AAGAGGTTGGAGTGATTTGGTTTGGTTTAGAGGGGTTCTCTATGTTGGA-AATCTAGGTG  350
            |||||||||||||||||||||||||| |||||||||||||||||||| | |||| | |  
Sbjct  301  AAGAGGTTGGAGTGATTTGGTTTGGTCTAGAGGGGTTCTCTATGTTG-ATAATCAAAGAA  359

Query  351  TTGAAAGTAAGAA-AGCTTAATCAGAT-TAT  379
            |||| |||||||| | ||||||||||| |||
Sbjct  360  TTGAGAGTAAGAATA-CTTAATCAGATGTAT  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5