BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482602
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36300.1 | Symbols: | Integral membrane Yip1 family protein... 1328 0.0
> AT2G36300.1 | Symbols: | Integral membrane Yip1 family protein
| chr2:15213022-15214272 REVERSE LENGTH=1251
Length=1251
Score = 1328 bits (719), Expect = 0.0
Identities = 894/974 (92%), Gaps = 29/974 (3%)
Strand=Plus/Plus
Query 1 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCTCCGGTGGATCTTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 AAGAAGATGACGAAGGATTTCGCAGTTCCACCTGTAGTTTTCCCCTCCGGTGGATCTTCA 197
Query 61 GCCGGTCCTAATGTCCAGCAACGAAGATTCCCAGCGACACCGTTTCAACCGCCGCGTCCT 120
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGCGGTGCTAATGTCCAGCAACGAAGATTCCCAGCGACACCGTTTCAACCGCCGCGTCCC 257
Query 121 TCTTCTTCCGCAATCCCTTTCATGTCGTTCGACATAGGATCCGCAGCCGCGTCTTCCGCT 180
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 258 TCTTCTTCCGCAATCCCTTTCATGTCATTCGACATTGGATCCGCAGCCGCGTCTTCCGCT 317
Query 181 ACACCTGCCGGACCATTCGGCGGCACAATCGCTTCCTCTTCGTCTTTTGGTGGAGGTTCA 240
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 318 ACACCTGCCGGACCATTCGGCGGGACAATCGCTTCCTCTTCTTCTTTTGGTGGAGGTTCA 377
Query 241 GCTTCGTTTGAAGATGAGGAGCCTTTACTTGACGAGCTCGGTATCCATCCGGATCAAATC 300
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 378 GCTTCGTTTGAAGATGAGGAGCCATTACTCGACGAGCTCGGTATCCATCCAGATCAAATC 437
Query 301 TGGAAGAAGACTAGATCGATTCTCAATCCTTTCCGGATTAATCAAACTGTTCACAAGGAT 360
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 438 TGGAAGAAGACTAGATCGATTCTCAATCCTTTTCGGATTAACCAAGCTGTTCACAAAGAT 497
Query 361 TCAGATCTATCTGGTCCGATCTTTCTATACCTTGCGCTTTGCTTATTTCAGTTGTTAGCT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 498 TCAGATCTATCTGGTCCGATCTTTCTGTACCTTGCGCTTTGCTTATTTCAGTTGTTAGCT 557
Query 421 GGTAAGATCCAGTTCGGTGTTATACTTGGATGGATCGTCGTCTCGTCCATATTCCTATAC 480
|||||||||||||||||||| ||||||||||||||||||||||| || || || ||||||
Sbjct 558 GGTAAGATCCAGTTCGGTGTCATACTTGGATGGATCGTCGTCTCCTCTATCTTTCTATAC 617
Query 481 GTCGTCTTCAACATGCTTGCTGGTAGAAACGGAAACCTTAATCTCCATACGTGTACGAGC 540
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 618 GTCGTCTTTAACATGCTTGCTGGTAGAAATGGGAACCTTAATCTCCATACGTGTACGAGC 677
Query 541 TTGGTTGGATACTGTTTGCTTCCGGTGGTGGTTTTATCGGCGGTGTCATTGTTCGTGCCG 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 678 TTGGTCGGATACTGTTTGCTTCCGGTGGTGGTTTTATCGGCGGTGTCATTGTTCGTTCCC 737
Query 601 CAGGGAGCGGGGCCGGTTCGGTTTGTGCTTGCGGCTGTGTTCGTGTTGTGGTCCACTAGA 660
|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 738 CAGGGAGCAGGGCCGGTTCGGTTTGTGCTTGCGGCTTTGTTTGTGTTGTGGTCCACTAGA 797
Query 661 GCCTGCTCTACATTGGTGGTATCTCTCGCCGATGGTGGAGAAGAGCATCGTGGTTTGATT 720
|||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 798 GCCTGCTCTACATTGGTGGTATCTCTTGCTGATGGTGGAGAAGAGCACCGTGGCTTGATC 857
Query 721 GCGTACGCTTGTTTCTTGATCTACACTCTCTTCTCACTTCTCGTTATATTTTGATTGAAT 780
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 858 GCGTACGCTTGTTTCTTGATCTATACTCTCTTCTCTCTTCTTGTTATATTTTGATTCCAT 917
Query 781 ATTGATAGATCGTGAA--------G-T--T-----AGCAAGTAGCAAAA---GGCTACAG 821
|||||||||||||||| | | | |||||||||||||| |||| ||
Sbjct 918 ATTGATAGATCGTGAATCACTTCCGATGCTGTGTTAGCAAGTAGCAAAAAAAGGCTGCA- 976
Query 822 ATATAAGTTCGTTGATGTGAGGTTGAATTGGATGCGTGTAA-A-GGCtttttt-----tt 874
|||||||||| |||||||||||||||||||| || | || | || | | | ||
Sbjct 977 ATATAAGTTCTTTGATGTGAGGTTGAATTGGGTGGGAATAGCACGG-TGTGTAAAGGCTT 1035
Query 875 ttttGGGATAAATTTAGAAAGATGTTTAAGAAATTTGATTCAATGTTTGTATCTGTCACT 934
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TTTTGG-ATAAATTTAGAAAGGTGTTTAAGAAATTTGATTCAATGTTTGTATCTGTCACT 1094
Query 935 CGATCTTTAAGGTT 948
|||||||||||||
Sbjct 1095 TGATCTTTAAGGTT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5