BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482603
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36305.1 | Symbols: RCE1, ATFACE-2, ATFACE2, FACE2 | farnesy... 1622 0.0
> AT2G36305.1 | Symbols: RCE1, ATFACE-2, ATFACE2, FACE2 | farnesylated
protein-converting enzyme 2 | chr2:15214519-15216612
FORWARD LENGTH=1187
Length=1187
Score = 1622 bits (878), Expect = 0.0
Identities = 980/1029 (95%), Gaps = 8/1029 (1%)
Strand=Plus/Plus
Query 1 TAGAAGACCGCCGGACTAAGATTCAACCAGCGGTGACTTCGACACTTATTAGCCGGAAGA 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1 TAGAAGACCGCCGGACTAAGATTTAACCAGCGGTGACTTCGACACTTATTAGCCGGTATA 60
Query 61 TTTCTTCGCCGGAGCTTCCTCAAAGATTATGGCCATCGATGGCGAGAGTATCTCGATGTC 120
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTCTTCGCCGGAGCTTCCTCAACGATTATGGCCACCGATGGCGAGAGTATCTCGATGTC 120
Query 121 TG-TGGCGGTGGCTGCCTGCGTCGCTATGGCACTATTCTACGTTTTGATCCTTTACGCTC 179
| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 -GTTGGCGGTGGCTACCTGCGTCGCGATGGCACTATTCTACGTTTTGATCCTTTACGTTC 179
Query 180 CCACCGTGATTCTCCGTCTCCCGTCGGCTTCTTCTTACTCCGAATTTATGATTCGGCGAT 239
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 180 CCACCGTGATACTCCGTCTCCCGTCGGCTTCTTCTTACACCGAATTCATGATTCGGCGAT 239
Query 240 TCATCTGCGCGGCCATTTGTACTGTAGTATCTCTCGTCTTCACAGCTTTTATTCTTCCGA 299
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 240 TCATCTGCGCGGCCATTTGTACTGTAGCATCTCTCGTCTTCACAGCTTTTATACTTCCGA 299
Query 300 TAAAAAGCTGGGAGGCCTCTGT-TATACTTGGAGTTTATGGTATAAGGACAGATCATCTG 358
|||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||
Sbjct 300 TAAAAAGCTGGGAGGCCTCT-TATATACTTGGAGTTTATGGCATAAGGAAAGATCATCTG 358
Query 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCCGGCTCTTTGGTC 418
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 359 TGGCAAGGAGTGGTGTATCCTCTTCTATTGACCTCGCTCGTTTATGCTGGGTCTTTGGTG 418
Query 419 TTGAAGTTGTT-ATTGCTCCTGGAATCATTGAAGGAAAATGGTGGAGGATGTAGTTCCTT 477
||||||||||| | | ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 419 TTGAAGTTGTTTACT-CTCCTGGAATCATGGAAGGAAAATGGCGGAGGATGTAGTTCCTT 477
Query 478 TGATTACATCAGAAGCTTTTTCCAAACAATTCCTGCTTCGGTACTGACAGGTGCTTCTAA 537
| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 478 TAATTACATCAGAAGCTTTTTCCAAACAATCCCTGCTTCGGTATTGACAAGTGCTTCTAA 537
Query 538 TGTTTCCATTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTTGTTTTCCGAGC 597
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 538 TGTTTCCGTTTGGCGCAATTTTATCGTGGCACCAGTAACTGAGGAGCTGGTTTTCCGATC 597
Query 598 TTGTATGATACCTTTGCTTCTGTGTGCTGGATTTAGGATTTACACTGCCATCTTTCTCTG 657
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 598 ATGTATGATACCTTTGCTTCTGTGTGCTGGGTTTAGGATTAACACTGCCATCTTTCTGTG 657
Query 658 CCCAGTTCTCTTTAGCTTGGCTCACTTGAACCATTTTAGAGAGATGTACATCAGGCATAA 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CCCAGTTCTCTTTAGCTTGGCTCACTTAAACCATTTTAGAGAGATGTACATCAGGCATAA 717
Query 718 CCGCAGCTATCTCCGGGCTTCACTGATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 CCGCAGCTATCTCCGGGCTTCACTTATTGTTGGTCTTCAGCTTGGCTACACAGTCATTTT 777
Query 778 TGGTGCATATGCATCGTTCCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGTGCATATGCATCGTTTCTCTTCATCAGAACCGGACATCTTGCTGCTCCTTTGTTTGC 837
Query 838 TCATATATTCTGCAACTACATGGGGTTGCCTGTGCTATACGCCCAA-GGAAAAGGTTTGG 896
||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 838 TCATATATTTTGCAACTACATGGGATTGCCTGTGCTATACGCA-AATGGAAAAGGTTTGG 896
Query 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTCACTTCTCTTTCCTTTAACAA 956
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 897 TGAGTGCAGCGTTCTTAGGCGGTGTGGTTGGGTTCGTCTTACTTCTCTTTCCTTTAACAA 956
Query 957 AGCCTCTCATGTACAACGATAGTACCAACAATTGTCCGTGTTGGCTTGGCTATTGCTTGT 1016
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 957 AGCCTCTCATGTACAACGATAGTACCAACGATTGTCCGTGTTGGCTTGGCTATTGTTTGT 1016
Query 1017 GGAATTGAC 1025
|||||||||
Sbjct 1017 GGAATTGAC 1025
Score = 130 bits (70), Expect = 3e-29
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1026 TTTGGACACAATATTTGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTG 1085
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TTTTGACACAATATTGGAATTATGGTCTTTTACTGCAAGCTAATGTTTCTTGATAGTTTA 1132
Query 1086 TCTAGTTTTTACCTTGTAAATATAT 1110
| |||||||| ||||||||||||||
Sbjct 1133 TGTAGTTTTTTCCTTGTAAATATAT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5