BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482604
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36307.1 | Symbols: ZPR4 | ZPR4 (LITTLE ZIPPER 4); other RNA... 941 0.0
> AT2G36307.1 | Symbols: ZPR4 | ZPR4 (LITTLE ZIPPER 4); other RNA
| chr2:15218040-15219415 REVERSE LENGTH=706
Length=706
Score = 941 bits (509), Expect = 0.0
Identities = 615/662 (93%), Gaps = 23/662 (3%)
Strand=Plus/Plus
Query 21 ACTTCATTTCGATTCTAACAAGTCTCGTCTTCCCTAAAGAACCAGGTTTTGTCGAGATGG 80
||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||
Sbjct 53 ACTTCATTTCGATTCTAACAAGTTTCTTCTTCCCAAAAGAACCAAGTTTTGTCGAGATGG 112
Query 81 AGAGGCTAAACTCGAAGCTGTACTTGCAAAACTGTTATATAATAAAGGAGAACGAGAGGT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 AGAGGCTAAACTCGAAGCTGTACTTGCAAAACTGTTATATAATAAAGGAGAACGAGAGGT 172
Query 141 TGAGGAAGAAAGCTCAGATTCTGAATCAAGAGAATCAACAACTTCTCTTCGAACTCAAAC 200
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 173 TGAGGAAGAAAGCTCAGATTCTGAACCAAGAGAATCAACAACTTCTCTTCGAACTCAAAC 232
Query 201 AAAAGCTCTCCAAAACCAAGAACTCTAATGGATCAAATCAAGG--------A-AACAACA 251
|||||||||| |||||||||||||||| ||||||||||||||| | |||||||
Sbjct 233 AAAAGCTCTCGAAAACCAAGAACTCTAGTGGATCAAATCAAGGAAACAACAACAACAACA 292
Query 252 ACAATCTCTCTTCATCAAGCTCTGCTTCTGGACAATCCTGATCGAACAACAAAACGCTTT 311
|||| ||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 293 ACAACCTCTCTTCATCAAGCTCTGCTTCTGGATAATCCTGAT-G--CAACAAAACTCTTT 349
Query 312 AGGACAAGATTTGGATTTGGTTAATTA-GAGAACCCATCATTTTTA--TTTTCTTTTATT 368
||||||||| ||||||| || |||||| |||||||||||||||||| |||| |||||||
Sbjct 350 AGGACAAGACTTGGATTCGGATAATTAGGAGAACCCATCATTTTTATTTTTTATTTTATT 409
Query 369 GGTGTAATGTAAGAAAAAAtagttaag-aagtggttagtgttagtattattatttattaa 427
|||||||||||||||||| ||| |||| || | | | | |||||| || || |||||||
Sbjct 410 GGTGTAATGTAAGAAAAATTAGCTAAGTAA-TAG-T-G-GTTAGTGGTAGTA-TTATTAA 464
Query 428 ttatggagtagttttt-tatttttGTTGGGTTCTTCTAATTAATTTACTACAAAAAGGAC 486
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 TTATGGAGTAGTTTTTATATTTTTGTTGGGTTCTTCTAATTAAATTACTACAAAAAGGAC 524
Query 487 AGAAGTGTTGTGTGCTCTCTGGCCTATCTTCTGAGGGATATTTTACTTTTGTTTCCATTT 546
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AG-AGTGTTGTATGCTCTCTGGCCTATCTTCTGAGGGATATTTTACTTTTGTTTCCATTT 583
Query 547 ATATGTTAATTAGATTTTCTATTTTGCCTTTTCATGTGGGGTTTGGTTGTTTAGGACATG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATATGTTAATTAGATTTTCTATTTTGCCTTTTCATGTGGGGTTTGGTTGTTTAGGACATG 643
Query 607 CTGGATTCTGGGACTACATTGTACCTTCTGCTCTTCTCTTAAACAACCAGTATCTTTATA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 644 GTGGATTCTGGGACTACATTGTACCTTCTGCTCTTCTCTTAAACAACCAGTATCTTTAAA 703
Query 667 TT 668
||
Sbjct 704 TT 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5