BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482605
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36310.1 | Symbols: URH1 | uridine-ribohydrolase 1 | chr2:15... 1773 0.0
> AT2G36310.1 | Symbols: URH1 | uridine-ribohydrolase 1 | chr2:15224497-15226872
REVERSE LENGTH=1445
Length=1445
Score = 1773 bits (960), Expect = 0.0
Identities = 1067/1118 (95%), Gaps = 10/1118 (1%)
Strand=Plus/Plus
Query 169 ATGGAGAATTGTAATGGTGGGATCTCAAACGGTGACGTTTTGGGTAAGCGTGAGAAGCTC 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 252 ATGGAGAATTGTAATGGTGGGATCTCAAACGGTGACGTTTTGGGTAAGCATGAGAAGCTC 311
Query 229 ATTATCGACACAGACCCAGGAATCGATGATAGCATGGCGATAATGATGGCGTTTCAAACA 288
|||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 312 ATTATCGATACAGACCCAGGAATTGATGATAGCATGGCGATATTGATGGCGTTTCAAACA 371
Query 289 CCGGAGCTGGAGATTTTAGGACTGACTACTGTGTTTGGTAATGTTTCTACACAAGATGCT 348
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 372 CCGGAGCTGGAGATATTAGGATTAACTACTGTGTTTGGTAATGTTTCTACACAAGATGCT 431
Query 349 ACTCGCAACGCTTTACTCTTGTGTGAGATTGCTGGCTTCCCTGATGTTCCCGTCGCAGAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 432 ACTCGCAACGCTTTACTCTTGTGTGAGATTGCTGGCTTCCCTGATGTTCCCGTTGCAGAA 491
Query 409 GGAAGTTCTGAACCTTTAAAGGGTGGAATTCCGCGCGTTGCTGATTTTGTGCATGGTAAA 468
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 492 GGAAGTTCCGAACCTTTAAAGGGTGGAATTCCGCGTGTTGCTGATTTTGTGCATGGTAAA 551
Query 469 AATGGCCTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATGTGAGAAAAGTGCA 528
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 552 AACGGACTAGGAGATGTCTCTCTTCCTCCTCCGAGTAGAAAGAAATCTGAGAAAAGTGCA 611
Query 529 GCTGAGTTTCTAGATGAGAAGGTCTCAGAATATCCAGGTGAAGTCACCATTCTCGCCCTC 588
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 612 GCTGAGTTTCTAGATGAGAAGGTCGAAGAATATCCGGGTGAAGTCACCATTCTCGCCCTC 671
Query 589 GGACCTCTAACCAACCTGGCATTAGCCATCAAACGCGATAGTTCATTTGCGAGTAAGGTG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 GGACCTCTAACCAACCTGGCATTAGCCATCAAACGCGATAGTTCATTTGCGAGCAAGGTG 731
Query 649 AAGAAAATTGTTATTCTTGGTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 AAGAAAATTGTTATTCTTGGTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCT 791
Query 709 GAGGCTAATATATATGGTGACCCGGAAGCAGCTGATATCGTGTTCACATCTGGAGCGGAT 768
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 792 GAGGCTAATATATATGGTGACCCGGAAGCAGCTGATGTTGTTTTCACATCTGGAGCGGAT 851
Query 769 ATCACTGTTGTTGGTATAAACATCACAACCCAACTTAAACTATCAGATGATGACCTCTTA 828
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 ATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAGATGATGACCTCTTG 911
Query 829 GAGCT-GAGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTCTA 887
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 912 GAGCTTG-GTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTA 970
Query 888 CAGAGATTGGCACGTAAAATCTGATGGTGTCTACGGAGTGTACCTCCATGACCCAGTCAG 947
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 971 TAGAGATTGGCACGTCAAATCTGATGGTGTTTACGGAGTGTACCTCCATGACCCAGTCAG 1030
Query 948 CTTTGTGGCTGTAGTACGTCCTGATCTATTCACATATAAGAAGGGCGTTGTTCGGGTAGA 1007
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||
Sbjct 1031 CTTTGTGGCTGTAGTACGGCCTGATTTATTCACATATAAGAAAGGCGTTGTTCGGGTGGA 1090
Query 1008 AACTCAAGGAATATGCGTTGGCCACACTCTCATGGATCAAGGCCTCAAGAGATGGAACGG 1067
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1091 GACTCAAGGGATATGTGTTGGCCACACGCTCATGGATCAAGGCCTCAAGAGATGGAACGG 1150
Query 1068 AAGCAATCCGTGGGTGGGATATTCACCGATATCGGTTGCATGGACGGTGGACGTAGAAGG 1127
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1151 AAGCAATCCGTGGGTGGGATATTCACCGATATCAGTTGCTTGGACGGTTGACGTAGAAGG 1210
Query 1128 AGTGTTGGAATATGTCAAAGCAAAGCTGATGAAGCCATAAAAGATGAGTTTCAGTCACAG 1187
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1211 AGTTTTGGAATATGTCAAAGCAAAGCTGATGAAGCCATAAAAGATGAGTTTCAG--A--G 1266
Query 1188 AACACGTTAGAATGTGAATATTCATTTAAAATGGCATCATCACATTCATCTCTTCTGGTT 1247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 --CACGTTAGAGTGTGAATATTCATTTAAAATGGCATCATCACATTCATCTCTTCTGGTT 1324
Query 1248 CTAACCGGAATCTCA-ATTTCATCTCTGTATTTTATCT 1284
||||||||||||| | ||| ||||||||||||| ||||
Sbjct 1325 CTAACCGGAATCTTATATT-CATCTCTGTATTTGATCT 1361
Score = 167 bits (90), Expect = 3e-40
Identities = 140/161 (87%), Gaps = 16/161 (10%)
Strand=Plus/Plus
Query 30 TAATCCACTTCGATTCTGCTTTTTATATAAAGTTGA-GTTTTT---C-------TCGT-- 76
|||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 58 TAATCCACTTCGATTCTGCTTTTTATATAAAGTTGAGGTTTTTGAGCTATTTTTTC-TCC 116
Query 77 TAAA-GATTCTGAAAAAAGCTTAGACCTTTCTGATCTGATACGTATCTATAAATCTGGAA 135
|||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 TAAAGGATTCCGAAAAAAGCTTAGACCTTTTTGATCTGATACGTATCTATAAATCTGGAA 176
Query 136 AAGAGCTGAGAGTTTCAAGGGGTTTTAAATTCGATGGAGAA 176
| |||||||||||||||||||||||||| |||| || ||||
Sbjct 177 AGGAGCTGAGAGTTTCAAGGGGTTTTAATTTCGCTG-AGAA 216
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 GGACGACTCAGCAATTCGTCGTCTTCTTT 29
|||||||||||||||||||||||||||||
Sbjct 1 GGACGACTCAGCAATTCGTCGTCTTCTTT 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5