BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482606
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36325.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1629 0.0
> AT2G36325.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr2:15231393-15233281 FORWARD LENGTH=1144
Length=1144
Score = 1629 bits (882), Expect = 0.0
Identities = 1040/1117 (93%), Gaps = 8/1117 (1%)
Strand=Plus/Plus
Query 1 AACAATTTCGACCATCATGAACATAACTAAACTCACTCCTTGGTTTCTTTTCTCGTGTCT 60
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AACAATTTCAACCATCATGAACATTACTAAACTCACTCCTTGGTTTCTTTTCTCGTGTCT 60
Query 61 GATTCTTCTATCAGACTACATAAAGGTAAACGGCTCAATTTCTCCATCTAGCGAGCAGAC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 61 GATTCTTCTATCAGACTACATAAAGGTAAACAGCTCAATTTCTCCATCTAGCGAGCAAAC 120
Query 121 ACAAAAAGATGGCATTTTTGGTTTCAAACCTA-AGAAGTTGTTTGTGTTCGGAGACTCGT 179
|||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 121 ACAAGAAGATGGCTTTTTTGGTTTCAAACCTACA-AAGTTGTTTGTGTTCGGAGACTCGT 179
Query 180 ATGCAGACACCGGAAACACACCTGTCCTGATCGCTCCTTCGTGGAGGTTTCCCAATGGAA 239
|||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||
Sbjct 180 ATGCAGACACTGGAAACACACCTTTCCTGATCGTTCCCTCGTGGAGGTTTCCCAATGGAA 239
Query 240 TCACTTTCCCGGGA-TGGCCTACCGGGCGGTTC-GCCGATGGTCGCGTCTCCACTGATTA 297
|||||||||||||| | |||||||||||||| | |||||||| || |||||||||||
Sbjct 240 TCACTTTCCCGGGAATA-CCTACCGGGCGGTTTAGT-GATGGTCGTGTTTCCACTGATTA 297
Query 298 TCTCGCGAAGTATGTTGGACTTAGAACGCCGATCACACACAAATGGGGGAAATACGGACG 357
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 TCTCGCGAAGTATATTGGAGTTAGAACGCCGATCACATACAAATGGGGGAAATACGGACG 357
Query 358 ACCTAGACTAGTTGTGAAAAGAGGAATGAATTTCGCATATGGTGGAGCCGGCGTGTTTGA 417
||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ACCGAGACTAGCTGTGAAAAGAGGAATGAATTTCGCATATGGTGGAGCCGGCGCGTTTGA 417
Query 418 GACAATGTTCAAATTAATTCCTAACGCTAGTGTGCAGATCGATTTCTTTGAACAACTCCT 477
|||||||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 418 GACAATGTTCAAATTAGTTCCTACCGCTAGTGTGCAGATTGATTCCTTTGAACAACTCCT 477
Query 478 CAGGAGAAATGTTTATTCACCGGCCGATCTCAACTCCTCCGTCGCTTTCTTTAGCATCGT 537
|| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 478 CATGAGAAACGTTTATTCACCGGCCGATCTCAACTCTTCCGTCGCTTTCTTTAGCATCAT 537
Query 538 CGGCAATGACTACCTTACTTACAACAGACGTAATGGTACTGAACAGGGTCGTCCAGCACT 597
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 538 CGGCAATGACTACCTTACTTACGACAGACGTAATGGTTCTGAAGAGGGTCGTTCAGCACT 597
Query 598 CATAAGGAGAGTAGTGAAACAAATTTTGTTAGATGTGAAGCGAATTAAGGATTTAGGAGT 657
|| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 598 CACAAGGAAAGTAGTGAAACAGATTTTGTTGGATGTGAAGCGAATTAAGGATTTAGGAGT 657
Query 658 AAGAAAGGTGTTGGTGGCTTTATCGCCCCCGCAGAAATGTTTGCCGTTGCTTGTCACTCC 717
|||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 658 AAGAAAGGTGTTAGTGGCTTTATCACCACCGCAGAAATGTTTGCCGAAGCTTGTCACTCC 717
Query 718 TAAAGGCTGCGACACCAACGACACCTCGACGCACCTCCACAACAGTCTTCTCCGCAAAGG 777
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TAAAGGCTGCGACACCAACGACACCTCGACGTACCTCCACAACAGTCTTCTCCGCAAAGG 777
Query 778 ACTAATAAAACTAAACGATAAGAAGATTAACAATGATGATAAAAGTTTCCTCATGTTTGA 837
||| |||||||||||||||||| ||||||||||| |||||||||||||| | | ||| ||
Sbjct 778 ACTGATAAAACTAAACGATAAGGAGATTAACAATAATGATAAAAGTTTCATGACGTTAGA 837
Query 838 CCTCTACAATGCTTTTGTTACAATATTCAAGAACAAAGGAGTTCCAGGAGTTTCGGTATT 897
||||||||||| ||||| || ||||||||||||||||||||| ||||||||||| |||
Sbjct 838 TCTCTACAATGCCTTTGTGACCATATTCAAGAACAAAGGAGTTTCAGGAGTTTCGACATT 897
Query 898 TCCGGATCCGTTGAAGGCATGTTGTGCTACAAAACGAGGTACCTCTTGTGGAGATATAAG 957
|||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 898 TCCGGATCCGTTTAAGGCATGTTGTGCAACAAAACGAGGTACCTTTTGTGGAGATAGAAG 957
Query 958 CCTGAGTGGTAAAAAGTTGTACAGTCTTTGCGAAGATCCAAAATCATTCTTCTTTTGGGA 1017
| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 958 CTTGAGTGGTAAAAAGTTGTACACTCTTTGCGATGATCCAAAATCATTCTTCTTTTGGGA 1017
Query 1018 CAATGTTCATATCACTGATCAAGGATGGCGTTCTGTATTTTCTCTTCTTCTTCCTGATTC 1077
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1018 CAATGTTCATATCAGTGATCAAGGATGGCGTTCTGTTTTTTCTCTTCTTCTTCCTGATTC 1077
Query 1078 ACAGTTTTAAATCAACTA-ATTCAAAATTCAACAATT 1113
|||||||||||||||||| || ||| || ||| ||||
Sbjct 1078 ACAGTTTTAAATCAACTAGAT-CAATATGCAATAATT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5