BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482607
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36330.1 | Symbols: | Uncharacterised protein family (UPF04... 1487 0.0
> AT2G36330.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr2:15233522-15235453 FORWARD LENGTH=1105
Length=1105
Score = 1487 bits (805), Expect = 0.0
Identities = 928/986 (94%), Gaps = 13/986 (1%)
Strand=Plus/Plus
Query 51 tttgatttttcCGATGAGATCTCCA-AAGAAGACGATGCCGTCGATGTCACCATCTTCAA 109
|||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 86 TTTGATATTTCCGATGAGATCTCCAGCA-AAGACGATGCCGTCGATGTCACCTTCTTCAG 144
Query 110 TTTCCACGGAGAAATCTCCACCTCCGTCAGATACTTCAATGGCTATAGTAGCTTTCGATA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TTTCCACGGAGAAATCTCCACCTCCGTCAGATACTTCAATGGCTATAGTAGCTTTCGATA 204
Query 170 ACCCCACTACTCACTTGTCTTCTTCTCCATCGCCGCCACATTCTCTTGATCATTCCAGTG 229
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 ACTCCACTACTCACTTCTCTTCTTCTCCATCGCCGCCACATTCTCTTGATCATTCCAGTG 264
Query 230 ATTCGGAGAAGGAAGATGAGAAACGTAGACCCGAGAGTAGGAGAAACAAGAATCC-GGTG 288
| |||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||
Sbjct 265 AATCGGAGAAGGAAGATGCGAAAAGTAAACCCGAGAGTAGAAGAAACAAGAATCCTGG-A 323
Query 289 AAGATTGAGGAAACTCCATCTCCAATAGTGGTGGTTCATAATCACAATCGCTCTGTGAAA 348
||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 324 AAGGTTGAGGAAACTCCATCTCCGATTGTGGTGGTTCATAATCACAATCGCTCTGTGAAA 383
Query 349 GAAGTGGTTCCAACGAGGAAGACTGCGAGAGTTGGTTCTGGGAGAAGTAGTGGGCAACGA 408
||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 384 GAAGTGGTTCCGACGAGAAAGAGTGCGAGAGTTGGTTCTGGGAGAAGTAGTGGCCAACGA 443
Query 409 TCTGGAGCTGTTTTGGCTATTTTGAGAAGGTCTAGGAGGGAAGAGGTAGTAAAGTTTGT- 467
||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 444 TCTGGAGCTGTTTCGGCTATTTTGAGAAGGTCTAGGAGAGAAGAGGTGGTAAAGTTT-TC 502
Query 468 AGCTTTAGGGTTTCGGTTGAGTGAGGTTGTGTTGGCTTTGATTTCGTTCTCAATCATGGC 527
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 503 AGCTTTAGGGTTTCGGTTGAGTGAGGTTGTGTTGGCTTTGATATCTTTCTCAATTATGGC 562
Query 528 TGCTGATAAAACTAAAGGTTGGAGTGGTGATTCTTTCGATCGTTACAAGGAGTACAGGTT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TGCTGATAAAACTAAAGGTTGGAGTGGTGATTCTTTCGATCGTTACAAGGAGTACAGGTT 622
Query 588 TTGTCTGTCTGTGAACGTGGTTGCTTTTATATATTCTAGTTTTCAAGCATGTGACTTAGC 647
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 623 TTGCCTGTCTGTGAACGTGGTTGCTTTTGTATATTCTAGTTTTCAAGCATGTGACTTAGC 682
Query 648 ATACCATCTTGTCAAAGAGAAGCACTTGATCAGCCACCACCTTAGACCTCTGTTTGAGTT 707
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 683 GTACCATCTTGTCAAAGAGAAGCATTTGATCAGCCACCACCTTCGACCTCTGTTTGAGTT 742
Query 708 CATCATAGATCAGGTACTTGCATATCTGCTTATGTGTGCCTCAACAGCAGCAGTCACTCG 767
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 743 CATTATAGATCAGGTACTTGCATATCTGCTTATGTCTGCCTCAACAGCAGCAGTCACTCG 802
Query 768 CGTTGATGATTGGGTTTCAAACTGGGGAAAAGACGATTTCACAGAGATGGCAAGTGCCTC 827
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 803 CGTTGATGATTGGGTTTCAAACTGGGGAAAAGACGAGTTCACAGAGATGGCAAGTGCCTC 862
Query 828 AATTGCTATGTCCTTCTTGGCCTTCCTTGCCTTTGCTTTCAGTTCACTCATTTCAGGTTA 887
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 863 GATTGCTATGTCCTTCCTGGCCTTCCTTGCCTTTGCTTTCAGTTCCCTCATTTCAGGCTA 922
Query 888 TAACCTATTTAACCAAGACTCTCTCTGATCCTCCCAACTTTTTTGTATAGGTCCACACTC 947
||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct 923 TAACCTATTTAACCAAGGCTCTCTCTGATCCTCCCACCTTTTT-GTATAGGTCCACACTC 981
Query 948 CTTGTGTGAATGTATAATAAAAAAGATCAAAATATATCTCTTAGCATTGTAATTACGATA 1007
||||||||| ||||||||||||| |||||| ||||||| | ||||||||||||| |||
Sbjct 982 CTTGTGTGA-TGTATAATAAAAATGATCAA--TATATCT-T-AGCATTGTAATTATTATA 1036
Query 1008 TTATTTTTGTAGACTATATGA-GGTT 1032
||||||||||| |||||| | ||||
Sbjct 1037 CTATTTTTGTAGCCTATATAAAGGTT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5