BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482609
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36355.1 | Symbols: | Family of unknown function (DUF662) ... 1029 0.0
AT3G52900.1 | Symbols: | Family of unknown function (DUF662) ... 414 5e-115
> AT2G36355.1 | Symbols: | Family of unknown function (DUF662)
| chr2:15242376-15243431 FORWARD LENGTH=696
Length=696
Score = 1029 bits (557), Expect = 0.0
Identities = 655/700 (94%), Gaps = 15/700 (2%)
Strand=Plus/Plus
Query 3 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAGAAATAATCC-AAAGGAACA 61
||||||||||||||||||||||||||||||||||||||||| | || || ||| |||||
Sbjct 9 ACTGAAAGCAGATAAATAGAGTTTAAGTGTTTGGAGCAGAG--A-AA-CCGAAACGAACA 64
Query 62 AAGAAGAACATGAATAGCACCAACTCAGGAGCTACAGCTTCGACCAAAAGCAAGATACCA 121
|| ||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 65 AACAAGAACATGAACAGTACCAACTCAGGAGCTACAACTTCGACTAAAAGCAAGATACCA 124
Query 122 ATGGATgagaaccaagaagaagagatatggcgaaagtttcaagcccgagaagaagagatc 181
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 125 ATGGAGGAGAACCAAGAAGAAGAGATATGGCGAAACTTTCAAGCCCGAGAAGAAGAGATC 184
Query 182 gagagaaagaagaTGGCAGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAAGAA 241
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 GAGAGAAAGAAGATGGCGGTTAAGGACAAGATTCAACAGCGACTTGGGTTTGCAGAGGAA 244
Query 242 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GCCACAAGAAGCTTGACACAGACATTGGAAGGGCTAGAGATCATGGGAGATCCAATGAGG 304
Query 302 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATAGAGAAATCAAATCTTTG 361
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 305 AAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGATGGCAAATCGAGAAATCAAATCTTTG 364
Query 362 TCTCAGAGCTGCCAGAAGAAGGAGAAGGAATACAAAGAGATCCAGGAAGCATTCGACGAA 421
||||||||||||||||||||||||| ||||||||||||||| || || || |||||||||
Sbjct 365 TCTCAGAGCTGCCAGAAGAAGGAGAGGGAATACAAAGAGATACATGAGGCTTTCGACGAA 424
Query 422 AAGAACAAAGAGAAAGCTCACCTTGTTTCAATCTTAATGGAGCTACTGGCTGAAAGTGAA 481
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 425 AAGAACAAAGAGAAAGCACACCTTGTTTCAATCTTAATGGAGCTACTAGCTGAAAGTGAA 484
Query 482 AGAGTAAGGGTGAAGAAGCTGGAAGATATCAACAAGACTGTTGGGTCCTTGCGATAATCA 541
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 485 AGAGTAAGGGTGAAGAAGCTGGAAGAGATCAACAAGACTATTGGGTCCTTGCGATAATCA 544
Query 542 ATTCTACCTTTTACATGGGAACTTGTTTGACTGTTGAGGTTTTGGATCATTTATGGATTA 601
||||||||||||||||||||||| |||||| | | |||||||||||||||||||||
Sbjct 545 ATTCTACCTTTTACATGGGAACT-GTTTGA--G--G---TTTTGGATCATTTATGGATTA 596
Query 602 AAATTCCTTTATTAAAGTG--AGAAAATGTGTAAAAGAATGTAATGGAAAAAAGGTTTGC 659
|| ||||| || | ||||| |||||| |||||||||||||||||||||||| | |||||
Sbjct 597 AAGTTCCTCTACTGAAGTGTGAGAAAAGGTGTAAAAGAATGTAATGGAAAAACGATTTGC 656
Query 660 CTCAGGGCTTTAAGAAATTCATACCTAAAGATGGTTTTGT 699
||||||| |||||||||||||||||||||||| ||||||
Sbjct 657 CTCAGGGATTTAAGAAATTCATACCTAAAGATATTTTTGT 696
> AT3G52900.1 | Symbols: | Family of unknown function (DUF662)
| chr3:19613118-19614027 FORWARD LENGTH=686
Length=686
Score = 414 bits (224), Expect = 5e-115
Identities = 329/380 (87%), Gaps = 6/380 (2%)
Strand=Plus/Plus
Query 157 gtttcaagcccgagaagaagagatcgagagaaagaagaTGGCAGTTAAGG-ACAAGATTC 215
|||||||||||||||||||||||||||||| ||||||||| | ||||||| | ||| |||
Sbjct 130 GTTTCAAGCCCGAGAAGAAGAGATCGAGAGGAAGAAGATGACTGTTAAGGAAAAAG-TTC 188
Query 216 AACAGCGACTTGGGTTTGCAGAAGAAGCCACAAGAAGCTTGACACAGACATTGGAAGGGC 275
||||||| || || |||||||| ||||| |||||| |||| || || |||||||||| ||
Sbjct 189 AACAGCGGCTCGGTTTTGCAGAGGAAGCTACAAGATGCTTAACTCAAACATTGGAAGAGC 248
Query 276 TAGAGATCATGGGAGATCCAATGAGGAAGGAAGTGGGGATGGTAAGAAAGAAAATCGAGA 335
||||||| ||||||||||| ||||| || ||||| || ||||| || ||||||||||| |
Sbjct 249 TAGAGATTATGGGAGATCCTATGAGAAAAGAAGTTGGTATGGTGAGGAAGAAAATCGACA 308
Query 336 TGGCAAATAGAGAAATCAAATCTTTGTCTCAGAGCTGCCAGAAGAAGGAGAAGGAATACA 395
|||| ||| |||| |||||||||||| | || ||||| ||||| ||||||||||||||||
Sbjct 309 TGGCGAATCGAGATATCAAATCTTTGGCACAAAGCTGTCAGAAAAAGGAGAAGGAATACA 368
Query 396 AAGAGATCCA--GGAAGCATTCGACGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCAAT 453
|||| | || |||||| ||| | |||||||||||||||||||||||||||||||| ||
Sbjct 369 AAGACA--CATTGGAAGCTTTCAATGAAAAGAACAAAGAGAAAGCTCACCTTGTTTCCAT 426
Query 454 CTTAATGGAGCTACTGGCTGAAAGTGAAAGAGTAAGGGTGAAGAAGCTGGAAGATATCAA 513
|||||||||||||||||||||||||||||| ||||| | ||||| ||||| || |||||
Sbjct 427 GTTAATGGAGCTACTGGCTGAAAGTGAAAGATTAAGGATAAAGAAACTGGAGGAAATCAA 486
Query 514 CAAGACTGTTGGGTCCTTGC 533
|||||||||||| ||||||
Sbjct 487 CAAGACTGTTGGAACCTTGC 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5