BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482616
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor ... 2222 0.0
> AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor
3 | chr2:15270088-15272823 REVERSE LENGTH=1615
Length=1615
Score = 2222 bits (1203), Expect = 0.0
Identities = 1380/1460 (95%), Gaps = 33/1460 (2%)
Strand=Plus/Plus
Query 71 ACAAGACTTTCATAAGCTATTAAATCAG-ACCCTGGAAGACAAAAAAGGTGAAAAACCAT 129
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 107 ACAAGACTTTCATAAGCTATTAAATCAGAACCCTGGAAGACAAAAAAGGGGAAAAACCA- 165
Query 130 TATATCCCAAAAGTAACCAGCACTTCTCTCTCTC-TTC--C-ATGGATTTGCAACTGAAA 185
| ||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||
Sbjct 166 T-TATCCTTAAAGTAACCAACACTTCTCTCTCTCTTTCTTCAATGGATTTGCAACTGAAA 224
Query 186 CAATGGAG-A---AGC--CAG---CAACAGCAGACAGAGTCAGAAGAACAACCTTCTGCT 236
|||||||| | ||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 225 CAATGGAGAAGCCAGCAGCAGCAACAACATCAGACAGAGTCAGAAGAACAACCTTCTGCA 284
Query 237 GCTAAGATACCAAAACATGTCTTTGACCAGATTCAATCTCACTCTGCAACTTCTACTGCT 296
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 285 GCTAAGATACCAAAACATGTCTTTGACCAGATTCATTCTCACACTGCAACTTCTACTGCT 344
Query 297 CTTCCTCTCTTTGCCCCTGAGCCTACTTCTTCTAAACTCTCCTCTTTGTCTCCTGATTCT 356
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTTCCTCTCTTTACCCCTGAGCCTACTTCTTCTAAACTCTCCTCTTTGTCTCCTGATTCT 404
Query 357 TCTTCCAGGTTCCCCAAGATGGGGAGCTTCTTTAGCTGGGCACAGTGGCAAGAACTTGAA 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TCCTCCAGGTTCCCCAAGATGGGGAGCTTCTTTAGCTGGGCACAGTGGCAAGAACTTGAA 464
Query 417 CTACAAGCACTGATCTACAGGTACATGTTGGCTGGTGCTGCTGTTCCTCAAGAACTCCTT 476
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 465 CTACAAGCTCTGATCTACAGGTACATGTTGGCTGGTGCTGCTGTTCCTCAGGAGCTCCTT 524
Query 477 TTACCAATCAAGAAAAGCCTTCTCCATCTATCTCCTTCCTACTTTCTTCACCATCCTCTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTACCAATCAAGAAAAGCCTTCTCCATCTATCTCCTTCCTACTTTCTTCACCATCCTCTT 584
Query 537 CAACACCTCCCTCATTACCAACCTGCTTGGTATTTGGGGAGGGCAGCGATGGATCCTGAG 596
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 585 CAACACCTACCTCATTACCAACCTGCTTGGTATTTGGGAAGGGCAGCGATGGATCCTGAG 644
Query 597 CCAGGGAGATGCAGGAGAACGGACGGTAAGAAGTGGAGATGTTCAAGAGACGTCTTCGCT 656
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 CCAGGCAGATGCAGGAGAACGGATGGTAAGAAGTGGAGATGTTCAAGAGACGTCTTCGCT 704
Query 657 GGCCACAAGTATTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GGCCACAAGTATTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTG 764
Query 717 GAAACTCCAACCACCGTCAATGCAACTGCCACGTCCATGGCTACAGCAGCAGCAGCCACA 776
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||
Sbjct 765 GAAACTCCAACCACCGTCAATGCAACTGCCACGTCCATGGCTTCATCAGTAGCAGCCGCA 824
Query 777 GCCACCACAACAACA--A-CAACGTCATCTACGTTTGCTTTTGGTGGTGGTGGTGATAGT 833
|||||||| |||||| | |||| |||||||||||||||||||||||||||||| ||||
Sbjct 825 GCCACCACTACAACAGCAACAACAACATCTACGTTTGCTTTTGGTGGTGGTGGTGGTAGT 884
Query 834 GGTGAGGAAGTTGTGGGTCAAGGAGGAtctttcttcttctctggctcttccaactcttct 893
| ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 885 G---AGGAAGTGGTTGGTCAAGGAGGATCTTTCTTCTTCTCTGGCTCTTCTAACTCTTC- 940
Query 894 tcatctgaacttctcCACCTTAGTCAAAGTTGTTCGGAGATGAAGCAAGAAAGCAACAAC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 --ATCTGAACTTCTCCACCTTAGTCAAAGTTGTTCGGAGATGAAGCAAGAAAGCAACAAC 998
Query 954 ATGAACAACAAGAGGCCATACGAGTCCCACAAT-GGATTCAGCAACAACAGATCAGATGG 1012
||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 999 ATGAACAACAAGAGGCCATACGAGTCCCACA-TCGGATTCAGTAACAACAGATCAGATGG 1057
Query 1013 AGGACACATCCTGAGGCCCTTCTTTGACGACTGGCCTCGTTCTTCGCTCCAAGAAGCTGA 1072
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1058 AGGACACATCCTGAGGCCCTTCTTTGACGATTGGCCTCGTTCTTCGCTCCAAGAAGCTGA 1117
Query 1073 CAATAGTTCAAGCCCCATGAGCTCAGCCACTTGTCTCTCCATCTCCATGCCCGGAAATTC 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1118 CAATAGTTCAAGCCCCATGAGCTCAGCCACTTGTCTCTCCATCTCCATGCCCGGGAACTC 1177
Query 1133 TTCCTCAGACGTCTCTCTGAAGCTGTCCACAGGCAATGAAGAGGAAGCTCGGAGCAACAA 1192
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1178 TTCCTCAGACGTCTCTCTGAAGCTGTCCACAGGCAACGAAGAGGGAGCCCGGAGCAACAA 1237
Query 1193 CAATGGGAGAGATCAGCAAAACATGAGCTGGTGGAGCGGTGGAGGGTCCAACCACCATCA 1252
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1238 CAATGGGAGAGATCAGCAAAACATGAGCTGGTGGAGCGGTGGAGGTTCCAACCACCATCA 1297
Query 1253 TCACCACATGGGCGGACCATTGGCCGAAGCACTGAGATCTTCCTCCTCGTCTTCCCCAAC 1312
|||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1298 TCACAACATGGGCGGACCATTGGCCGAAGCCCTGAGATCTTCTTCCTCATCTTCCCCAAC 1357
Query 1313 CAGTGTTCTCCATCAGCTGGGTGTCTCGACTCAAGCCTTTCATTGACCAGTGTAAAACCA 1372
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1358 CAGTGTTCTCCATCAGCTTGGTGTCTCGACACAAGCCTTTCATTGACCAGTGTAAAACCA 1417
Query 1373 ACACAACAACGCTGTTTTTACTGT-TTGTCTTGGGTTTTTATTCAAATTTCCTGTATAAA 1431
||||||||| || ||||||||||| || | |||| ||||||| |||||||||||||||||
Sbjct 1418 ACACAACAATGCGGTTTTTACTGTGTT-T-TTGG-TTTTTATCCAAATTTCCTGTATAAA 1474
Query 1432 GAGGGGAGGGTTTTGTTGTCCTCTTCCCTTTCTT-TTTTAAGATTTCCCTTGTATCTGTA 1490
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1475 GAGGGGAGGCTTTTGTTGTCCTCTTCCCTTT-TTCTTTTAAGATTTCCCTTGTATCTGTA 1533
Query 1491 GCTTTTCTCTGCAGATTTTA 1510
|| |||||||||||||||||
Sbjct 1534 GCCTTTCTCTGCAGATTTTA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5