BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482617
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36410.1 | Symbols: | Family of unknown function (DUF662) ... 1718 0.0
AT3G52920.1 | Symbols: | Family of unknown function (DUF662) ... 448 8e-125
> AT2G36410.1 | Symbols: | Family of unknown function (DUF662)
| chr2:15278769-15280604 FORWARD LENGTH=1194
Length=1194
Score = 1718 bits (930), Expect = 0.0
Identities = 1096/1168 (94%), Gaps = 44/1168 (4%)
Strand=Plus/Plus
Query 1 AAACAGAGCTTGCTTTACCAAATACCACCGAAACCCACTAAGAATACAGCAAATCGTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 AAACAGAGCTTGCTTTACCAAATACCACCGAAACCCACTAAGAATACAGCAAATCGTCTC 91
Query 61 TCCGCCATTAAAACACCTTCCTTTGGACAAA-AAAGCTTCAAGC-TTCTC-T--AA-ACC 114
| |||||||||||||||||||||| | |||| |||||||||| | ||||| | || |||
Sbjct 92 TTCGCCATTAAAACACCTTCCTTT-G-CAAACAAAGCTTCAAACTTTCTCTTAAAACACC 149
Query 115 CCCAAATCAGCAAAAATAGGGTTAATCGAAGAACCTCACCGTAAGTCCACTGAGGATTCA 174
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CCCAAATCAGCAAAGATAGGGTTAATCGAAGAACCTCACCGTAAGTCCACTGAGGATTCA 209
Query 175 ACTTCTTGCTTTGGTTTAAGGAAGAAGAGCAGCAAAAACCTCAA-G-G-AGAAGAAGTCA 231
| |||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||
Sbjct 210 AGTTCTTGCTTTGGTTTAAGGAAGAAGAACAGCAAAAACCTCAAGGAGAAGAAGAAGTCA 269
Query 232 AAGATGACTCAGAGTCAAACCAACGACGGAGCTGGAGCCGGAGCTGTTACGACGGTAGAA 291
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 270 AAGATGACTCAGAGTCAAACCAACGACGGAGCTGGAGCTGGAGCTGTTACGACGGTAGAA 329
Query 292 GCTGTTCCTCCTCAG-------C-C-G---CAGCCGCAGCCGCAGCAGCAGAGCAACGAG 339
|||||||||||||| | | | ||||| ||||||||||||||||||||||||
Sbjct 330 TCTGTTCCTCCTCAGCCTCAATCTCAGCCTCAGCCTCAGCCGCAGCAGCAGAGCAACGAG 389
Query 340 ATGGTGT-TGCATACGGGAAGTTTGAGTTTTAGTAGCCATATGTCGAGGGAAGACGAAGA 398
||||| | ||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 390 ATGGT-TCTGCATACGGGAAGCTTGAGTTTTAGTAGTCATATGTCGAGAGAAGACGAAGA 448
Query 399 GATGACTCGTTCTGCTCTTTCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GATGACTCGTTCTGCTCTTTCGGCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAG 508
Query 459 GATGGAAGTCCGTGAACGGATCCAAGCTCAATTGGGTCGGGTCGAGCAAGAAACCAAACG 518
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 509 GATGGAAGTTCGTGAACGGATCCAAGCTCAATTGGGTCGGGTCGAACAAGAAACCAAACG 568
Query 519 TCTCTCCACTATTCGTGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTTTC 578
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCTCTCTACTATTCGTGAGGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTTTC 628
Query 579 TGTGGTTCGTAAGAAGATTGATAGTGTTAACAAAGAACTCAAACCTTTAGGTTCCACTGT 638
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 629 TGTGGTTCGTAAGAAGATTGATAGTGTTAACAAAGAACTCAAACCTCTAGGTTCCACTGT 688
Query 639 TCAAAAGAAGGAAAGGGAATACAAAGAAGCACTTGATACATTCAATGAGAAGAACCGGGA 698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 689 TCAAAAGAAGGAAAGGGAATACAAAGAAGCACTTGATACATTCAACGAGAAGAACAGGGA 748
Query 699 GAAAGTACAGCTGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GAAAGTACAGCTGATCACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAA 808
Query 759 GTTGAGGATGATTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGAAA--GGT- 815
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 809 GTTGAGGATGATTAAGCTGGAGGAGCTGAGCAAGAGCATAGAAACCGTGTGAAAAAGGTT 868
Query 816 GTACAAGAA---CTAATTGGGTTCTTTGTGTGATGATGTACCTACCTAGTTTAAATTTTT 872
|| |||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 869 GTTCAAGAAGAACTAATTGGGTTCTTT-TGTG-TGATGTACCTACCTAGTTTAAAATTTT 926
Query 873 CATCTTGTAAGATGTGTGTatt--tttaagatttttattgttgttagttttg--aaagtc 928
|||| ||||||||||||| || ||| ||||||||||| | |||||| ||||||
Sbjct 927 CATCATGTAAGATGTGTGGGTTGCTTTTT--TTTTTATTGTTAT-AGTTTTTTTAAAGTC 983
Query 929 tttgggggtttgatttgtaaaatttgtGGGTTCTCTCTTATTTTTGATTTAACCAAATT- 987
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 984 TTTGGGGGTTTGATTTGTAAAATTTGTGGGTTCTCTCTTATTTTTGATT-AACCAAATTT 1042
Query 988 AGGGATATGGGAAAATGGGAGATTCTTAGGATACTGAAACTCATCACAGTGattattctt 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 AGGGATATGGGAAAATGGGAGATTCTTAGGATACTGAAACTCATCACAGTGATTATTCTT 1102
Query 1048 tctttctctgtattatgtttttgtatttgtctttttgaagaatttattattattttttgg 1107
||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||
Sbjct 1103 TCTTTCTCTGTATTATGTTTT-GTATCTGTCTTTT-GAAGAATTTATTATTTTTTTTTGG 1160
Query 1108 ctttttaGTAAAGTTTCTTCTCGTTGGC 1135
||||||||||||||||||||||||||||
Sbjct 1161 CTTTTTAGTAAAGTTTCTTCTCGTTGGC 1188
> AT3G52920.1 | Symbols: | Family of unknown function (DUF662)
| chr3:19624343-19626247 FORWARD LENGTH=1067
Length=1067
Score = 448 bits (242), Expect = 8e-125
Identities = 381/447 (85%), Gaps = 14/447 (3%)
Strand=Plus/Plus
Query 361 TTGAGTTTTAGTAGCCATATGTCGAGGGAAGACGAAGAGATGACTCGTTCTGCTCTTTCG 420
|||||||||||||| || ||||| | ||||||||||||||| ||||||||||||| ||
Sbjct 310 TTGAGTTTTAGTAGTCAGATGTCTAAAGAAGACGAAGAGATGGCTCGTTCTGCTCTCTCT 369
Query 421 GCGTTTAGAGCTAAAGAAGATGAGATTGAGAAGAGGAGGATGGAAGTCCGTGAACGGATC 480
|| ||||| |||||||||||||||||||||||||||| |||||||| |||||| || |
Sbjct 370 GCTTTTAGGGCTAAAGAAGATGAGATTGAGAAGAGGAAAATGGAAGTTCGTGAAAGGGT- 428
Query 481 CAA-GCTCA-ATTGGGTCGGGTCGAGCAAGAAAC-CAAACGTCTCT-CCACTATTCGTGA 536
|| ||||| || ||||| || ||| |||| || | ||||| | | | ||| || ||
Sbjct 429 TAAGGCTCAGCTT-GGTCGTGTTGAGGAAGAGACTC-GTCGTCT-TGCTAGTATCCGCGA 485
Query 537 GGAGCTTGAGTCTATGGCAGATCCTATGAGGAAGGAAGTT--TCTGTGGTTCGTAAGAAG 594
|||||||||| | ||||||||||| ||||||||||||||| | || ||| |||||||||
Sbjct 486 GGAGCTTGAGACAATGGCAGATCCCATGAGGAAGGAAGTTAAT-TG-GGTGCGTAAGAAG 543
Query 595 ATTGATAGTGTTAACAAAGAACTCAAACCTTTAGGTTCCACTGTTCAAAAGAAGGAAAGG 654
|||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 544 ATTGATAGCGTCAACAAAGAACTCAAACCATTAGGCTCTACTGTTCAAAAGAAGGAAAGG 603
Query 655 GAATACAAAGAAGCACTTG-ATACATTCAATGAGAAGAACCGGGAGAAAGTACAGCTGAT 713
||||||||||||||| ||| |||| ||||| |||||||| || |||||||| ||||||||
Sbjct 604 GAATACAAAGAAGCA-TTGGATACGTTCAACGAGAAGAATCGTGAGAAAGTTCAGCTGAT 662
Query 714 CACAAAACTCATGGAGATGGAACAGTTGGTTGGAGAAAGCGAGAAGTTGAGGATGATTAA 773
||| || || |||||||||| ||||||||||||||||||||||||| ||||| ||| ||
Sbjct 663 CACCAAGCTAATGGAGATGGGACAGTTGGTTGGAGAAAGCGAGAAGCTGAGGTTGAAGAA 722
Query 774 GCTGGAGGAGCTGAGCAAGAGCATAGA 800
|||||| ||||| |||| |||||||||
Sbjct 723 GCTGGATGAGCTAAGCAGGAGCATAGA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5