BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482620
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36420.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1980 0.0
> AT2G36420.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G03670.1);
Has 10588 Blast hits to 6606 proteins in 440 species: Archae
- 8; Bacteria - 365; Metazoa - 4146; Fungi - 1198; Plants
- 483; Viruses - 212; Other Eukaryotes - 4176 (source: NCBI
BLink). | chr2:15286498-15288990 FORWARD LENGTH=1320
Length=1320
Score = 1980 bits (1072), Expect = 0.0
Identities = 1251/1335 (94%), Gaps = 21/1335 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAG-A--AGAAGAAGAAGCATTTACATGAGTTTCTTGAAGATGACCAAGAGCCT 57
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAGAAGGAGAAGAAGAAGCATTTACATGAGTTTCTTGAAGATGACCAAGAGCCT 60
Query 58 TTTCATCTTAACCATTACATCGGCGACCTTCGTTCTCAGATGGGTTGCTCCGATTTGCGT 117
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 61 TTTCATCTTAACCATTACATCGGCAACCTTCGTTCTCAGATGGGTTGCTCCGATATGCGT 120
Query 118 GTCAAGAAGCGAAAGTCCGACAACGTTGCGGCGTTTCCTCCTGGTTTGTTCTCCTGCGAG 177
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 121 GTCAAGAAGCGAAAGTCCGATAACGTCGCCACGTTTCCTCCTGGTTTGTTCTCCTGCGAG 180
Query 178 AACTCTTGTTTCTTCGCGGCTCATAAATCTCCTGACCCTAGAAAGTCTCCTCTATTTGAG 237
||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 181 AACTCTTGTTTCTTCGCAGCTCATAAATCTCCTGACCCGAGAAAGTCTCCACTCTTTGAG 240
Query 238 CTCCGGTCTCCAGGG-AAGAAGAAGACACGTGAGGGTCGAGTTTTCCTCCAGATTCCGGC 296
|||||||| || ||| |||||||||| |||||| |||||||||||||| ||||| |||||
Sbjct 241 CTCCGGTCGCC-GGGAAAGAAGAAGATACGTGACGGTCGAGTTTTCCTTCAGATACCGGC 299
Query 297 AAGAACCGCCGCAATTCTCTTGGACGCGGCGGCGAGGATTCAGAAGCAGCAGTCGGAGAA 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 300 GAGAACCGCCGCAATTCTCTTGGACGCAGCGGCGAGGATTCAGAAGCAGCAGTCAGAGAA 359
Query 357 GGCTAAGAACAACAAAGCTCGGACCAGAGGTAACGGGTTTGGTATGTTCGGGTCTGTCTT 416
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GGCTAAGACCAATAAAGCTCGGACCAGAGGAAACGGGTTTGGTATGTTCGGGTCTGTCTT 419
Query 417 AAAGCTGCTGACGA-ACCGTAAAACAAAACCGCGTTTGGATAACGCTGATGGAAACGCGG 475
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 420 GAAGCTGCTGAC-ATACCGTATAACAAAACCGCGTTTGGATAACGCTGATGGAAACGCAG 478
Query 476 TTTCGTTGGGACGCGGGTCGGAAGCAACGagtagtagtagtagtagtagCC-GAGGAGAG 534
||||||||| ||||||||||||| | | | | | |||||||||| || |||||
Sbjct 479 TTTCGTTGGAACGCGGGTCGGAA-C--C-----G-A--CG-AGTAGTAGCCGGA-GAGAG 525
Query 535 CGTTTCTTGGAGATTGGCGATAAATGCTTTTGTGAGAGCCCTTTCCATTTTGTTCTCCAC 594
||| || |||||||| | ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 526 CGTATCGTGGAGATTAGTGATAAATGCTTTTGTGAAAGCCCTTTTCATTTTGTTCTCCAA 585
Query 595 ACAACTCCTTCTTCCTCCGGTCATCGGACTCCTCACTTTACATCGACGGCCAGTTCTCCG 654
||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 586 ACAACTCCTTCTTCCTCCGGTCACCAGACTCCTCACTTTACATCGACGGCCACTTCTCCG 645
Query 655 GCGCGACGCAGTACagaggacgaagatagcgatgagacagagagcttagagaaagtgaga 714
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GCGCGACGCAGTACTGAGGACGAAGATAGCGATGAGACAGAGAGCTTAGAGAAAGTGAGA 705
Query 715 ggacaagaagaagaagataaagaagaggaagacaaggaaCAATGTAGCCCTGTCTCTGTA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GGACAAGAAGAAGAAGATAAAGAAGAGGAAGACAAGGAACAATGTAGCCCTGTCTCTGTA 765
Query 775 CTTGACCCTCTCgaggaggaggaggaggacgaggaCCACCACCAACACGAGCCTGATCAT 834
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 766 CTTGACCCTCTTGAGGAGGAGGAGGAGGACGAGGACCACCACCAACACGAGCCTGATCCT 825
Query 835 CCCAATATCCTCTCTTGCAGCTTTGAAATTGTACAACGGGCGAAAAGGCGGTTACTCAAG 894
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 826 CCCAATAACCTCTCTTGCAGCTTTGAAATTGTACAACGGGCTAAAAGGCGGTTACTCAAG 885
Query 895 AAGCTTCGTAGATTCGAGAAGTTAGCGGGGCTGGATCCTGTAGAGCTCgaagggaagatg 954
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 886 AAGCTTCGTAGATTCGAGAAGTTAGCGGGGCTGGATCCTGTGGAGCTTGAAGGGAAAATG 945
Query 955 tcggaagaagaagatgaagaagaagaagagtatgaggagagtgaggaagaCGATAACATA 1014
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 946 TCGGAAGAAGAAGATGAAGAAGAGGAAGAGTATGAGGAGAGCGAGGAAGATGATAACATT 1005
Query 1015 AGGATTTACGATTCAGATGAAGAATATGAGGACGTGGATGAAGCAATGGCACGAGACAGG 1074
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1006 AGGATTTACGATTCAGATGAAGAATATGAGGACGTGGATGAAGCGATGGCACGAGAGAGC 1065
Query 1075 GGATGCGCggaagaggagaagaggaagaagaatgatgagaggcagaagaagtggaggatg 1134
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1066 AGATGCGCGGAAGATGAGAAGAGGAAGAAGAATGATGAGAGGCAAAAGAAGTGGAGGATG 1125
Query 1135 atgaatgcatggaggGTAGGGTTGGGAGCAGAGGAGGACGTGGACGCGGTGGTGCGGAAA 1194
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1126 ATGAATGCATGGAGGGTAGGGTTGGGAGCTGAGGAAGACGTGGACGCGGTGGTGCGGAAA 1185
Query 1195 GATTTAAGAGAGGAGGCCGGAGAATGGACAAGACACGGTGGAGAAATGGAAGAGGCCGTG 1254
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1186 GATTTGAGAGAGGAGGCCGGAGAATGGACAAGACACGGTGGAGAAGTGGAAGAGGCTGTG 1245
Query 1255 TCCGATCTCGAGCTCTCTATCTTCTTTGTCTTGATTGATGAATTTTCCCACGAACTTGTC 1314
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1246 TCCGATCTCGAGCACTCTATCTTCTTCGTCTTGATTGATGAATTTTCCCGCGAACTTGTC 1305
Query 1315 TCTTCTTCTCTATGA 1329
||||||| |||||||
Sbjct 1306 TCTTCTTTTCTATGA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5