BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482622
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36440.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 287 3e-77
> AT2G36440.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:15292648-15292872 FORWARD LENGTH=225
Length=225
Score = 287 bits (155), Expect = 3e-77
Identities = 188/204 (92%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 29 CTAGCAGGCCAAACGAAATTCAAAGGCTGATAGATCATAAAGAGATGCCTCAAGATCACC 88
|||||||| || ||||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 23 CTAGCAGGTCAGACGAATTTCAAAGGCAGATAGATCATAAAGAGATGCCTCGAGATCACC 82
Query 89 AGCTTGAAAGGCGCATTGATATTCACACGACTCGTTCA-CGAGGGGGCAGTCTAGTCGAG 147
| ||||||||| || | ||||||||||||| |||| | ||||||||||||||||| |||
Sbjct 83 AAATTGAAAGGCACACTCATATTCACACGACGCGTT-ACCGAGGGGGCAGTCTAGTTGAG 141
Query 148 GAGGTCATGGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA 207
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GAGGTCATCGAGAAGCTTGAGAGATTCAAAGTACGTACGGTTAACATCTTGGTGGGAGGA 201
Query 208 GAAGATGACGAACCGAAGAAATAA 231
||||||||||||| ||||||||||
Sbjct 202 GAAGATGACGAACAGAAGAAATAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5