BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482626
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36470.1 | Symbols: | Plant protein of unknown function (DU... 1940 0.0
> AT2G36470.1 | Symbols: | Plant protein of unknown function (DUF868)
| chr2:15299362-15300990 REVERSE LENGTH=1629
Length=1629
Score = 1940 bits (1050), Expect = 0.0
Identities = 1278/1383 (92%), Gaps = 35/1383 (3%)
Strand=Plus/Plus
Query 171 TCCATTTCTTCTCTGCAACAACTTCCGTACC--CAAATACTTAAAAACCCTAACTAATAC 228
||||||||||||||| ||||||||||||| |||||| | ||| |||||||| | |
Sbjct 256 TCCATTTCTTCTCTG---CAACTTCCGTACCAAAAAATACAT-AAAGCCCTAACT-A-A- 308
Query 229 TATTATTTCTCCACCAGGTTTCTTTATCTTTTAGTTTCCCGGTaaaaaaaaTCTCTCTGT 288
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 309 TATTATTTCTCCACCAAGTTTCTTTATCTTTTAGTTTCCCGGT--AAAAAATCTCTCTGT 366
Query 289 CATGTCTCTTATGTTCTTCCACGTCGTTCCTTAATCT-CCTA-ACAGAATCTCTAAACTT 346
|||| |||||||||||||||||||||||| |||||| || | |||||||||||||||||
Sbjct 367 CATG--TCTTATGTTCTTCCACGTCGTTCC-TAATCTCCCAAGACAGAATCTCTAAACTT 423
Query 347 CA-TTTGCTCCTTCTTTTTCTA-AAAACTTTGTCTCCCTCCAAAGACCa-aaaaaaTTGT 403
|| |||||||||| || | | |||||||| ||||||||||||||||| |||||| |||
Sbjct 424 CATTTTGCTCCTT-TTCCAC-ACAAAACTTTCTCTCCCTCCAAAGACCACAAAAAA-TGT 480
Query 404 TCTTCCTTCCTTCAACTTCAAGTATCTCTCTTTATTCACACGTATAGCATCCAAAACC-A 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 TCTTCCTTCCTTCAACTTCAAGTATCTCTCTTTATTCACACGTATAGCATCCAAAACCAA 540
Query 463 AAATCTATAACCATTTCCTCTGTAAAGTTTCTTCCTTTCTATCTTTCCCGGGaaaaaaaa 522
|||||||||||| |||||||||||||||||||||||||||| | ||||| || ||||||
Sbjct 541 AAATCTATAACCTTTTCCTCTGTAAAGTTTCTTCCTTTCTAACCTTCCC--GAGAAAAAA 598
Query 523 aaaCAACCCTTTCTGTTAGAAAACCATGAGAGGTCTCGCGGCTTGTTACAGTGAACACGC 582
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACA-AACCCTTTCTGTTAGAAAACCATGAGAGGTCTCGCGGCTTGTTACAGTGAACACGC 657
Query 583 CATTAAAGTATCAGATGCATATTGTTCAGGTCCATCAAATCATTCCTACATATCTCCGAC 642
|||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 658 CATTAAAGTATCAGATACATATTGTTCAGGTCCATCGAATCATTCCTATATATCTCCGAC 717
Query 643 ATTACCTCCTTCAATCCCCGACACAGTAACCACCACTTATAAATCCAATCTCCCTTCTTC 702
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 718 ATTACCTCCTTCAATCCCCGACACAGTAACCACCACTTATAGATCCAATCTCCCATCTTC 777
Query 703 CGACAAACCCCTCTCTGTTTCACTCACCTGGTCGGATAATCTCACCGTCGTCATCTCAAC 762
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGACAAACCCGTCTCTGTTTCACTCACCTGGTCGGATAATCTCACCGTCGTCATCTCAAC 837
Query 763 GCCGCCGAAATCATACTCTGTTTCTCTCAGGAAACCTAAAGGATCAAGAAAGTTGACTTC 822
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 838 GCCGCCGAAATCATACTCTGTTTCACTCAGAAAACCTAAAGGATCAAGAAAGTTGACTTC 897
Query 823 TTCCTCCGGTTCACTCAACGCGGAGATTCTTTGGGATCTATCGGAAGCAGAGTACGAAAA 882
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 898 TTCCTCCGGTTCACTCAACGCCGAGATCCTCTGGGATCTATCGGAAGCAGAGTACGAAAA 957
Query 883 CAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTGGTGAATTCCGAGATTAC 942
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 958 CAACGGACCTGAACCAATAAGAAGATTCTTCGTCGTCGTCGTTGTAAATTCCGAGATTAC 1017
Query 943 GCTCAGAATCGGCGACGTTGACCGCAAGCGAGACACGTCATCATCGTCGT-G-G-CGAGT 999
||| || ||||||||||||||| | |||||||||||||||||||||||| | | |||||
Sbjct 1018 CCTCGGAGTCGGCGACGTTGACCACGAGCGAGACACGTCATCATCGTCGTCGTGGCGAGT 1077
Query 1000 CTCAAAAACAGAGAGATTCTCAGGGACTTGTTGGCTCACGACGAAGGCTCAATTCTCCGA 1059
||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1078 CTCAAAAACGGAGAGATTCTCTGGAACTTGTTGGCTCACGACGAAAGCTCAATTCTCCGA 1137
Query 1060 CGTTGGAACTAAACACGAGATTCAGATTCAATGCGACGGCGGCGGAGGAGGAGGAG-A-A 1117
||| |||| ||||||||||| ||||||||||||| ||| || ||||||||||||| | |
Sbjct 1138 CGTCGGAAGGAAACACGAGATACAGATTCAATGCGGCGGAGGAGGAGGAGGAGGAGGAGA 1197
Query 1118 G-AAGGGCATTTATGGAAATTGAAAAGTCCTGAAACGATGTCGGTTTATGTGGATAAGAG 1176
| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 GGAAGGGTATTTATGGAAAGTGAAAAGTCCTGAAACGATGTCGGTTTATGTTGATAAGAG 1257
Query 1177 GAAAGTGTTTTCGGTGAAGAAGATAAAGTGGAATTTTAGAGGGAATCAAACGATGTTCTT 1236
|||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| ||
Sbjct 1258 GAAAGTGTTTTCGGTGAAGAAGCTTAAGTGGAACTTTAGAGGGAATCAAACCATGTTTTT 1317
Query 1237 CGATGGAATGCTTATAGACATGATGTGGGATTTACACGACTGGTTTTACAAAGAAACGGc 1296
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 CGATGGAATGCTTATAGACATGATGTGGGATTTACACGACTGGTTCTACAAAGAAACGTT 1377
Query 1297 gtcgtct-tcttcgactacttcgtcgtccaaaactgcgtcgtcgtcatcgtcttcttcga 1355
||||||| | |||||||| ||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 1378 GTCGTCTGT-TTCGACTAGTTCATCGTCTAAAACGGCGTCGTCGTCATCGTCTTCTTCAA 1436
Query 1356 cttcATCGTCTTCTCCTCCGTGTGCTGTGTTTATGTTTCGGAGGAGGAGTGGTTTGGATA 1415
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1437 CTTCATCGTCTACTCCTCCGTGTGCTGTGTTTATGTTTAGGAGGAGGAGTGGTTTGGATA 1496
Query 1416 GTagattatggattgatgaagatgaggaagagagtaagatgaagaagaagattagttcaa 1475
||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||| |
Sbjct 1497 GTAGATTATGGATTGATGAAGATGAACAAGAGAGTGAGATGAAGAAGAATATTGGTTCTA 1556
Query 1476 gagatgagaaACATTCGTTTTCTCTTATCATTTGTGCCTCTAAAAAGTGAACaaaaaaa- 1534
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1557 GAGATGAGAAACATTCGTTTTCACTTATCATTTGTGCCTCTAAAAAGTGACCAAATAAAC 1616
Query 1535 aaa 1537
|||
Sbjct 1617 AAA 1619
Score = 63.9 bits (34), Expect = 4e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1 TGGTACAAAATATCTAAATTTCATTTCTGCCCATTTCTTGTCG 43
|||||||||||||||||||||||||||||| || ||||||||
Sbjct 1 TGGTACAAAATATCTAAATTTCATTTCTGCAAATCTCTTGTCG 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75853023495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5