BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482628
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36485.1 | Symbols: | ENTH/VHS family protein | chr2:153069... 1116 0.0
> AT2G36485.1 | Symbols: | ENTH/VHS family protein | chr2:15306954-15307794
REVERSE LENGTH=841
Length=841
Score = 1116 bits (604), Expect = 0.0
Identities = 758/828 (92%), Gaps = 27/828 (3%)
Strand=Plus/Plus
Query 1 CAACCCTAATTGATCGGAGATTGTCCAAACTCTCTGCCA--TTT------TTCGAAGCAT 52
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 2 CAACCCTAATTGATCGGAGATTGTCCAAACTCTCTGACATTTTTGCCGAATTCGAAGCAT 61
Query 53 CCCTCCTATCATCTCCGTCTTCTTCGCAGAATCGCGTTATGCATCTCAATTTGTAGATTG 112
||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 62 TCCTTCTATCTTCTCCGTCTTCTTCGCAGAATCGCGTTATGCATCTCAATTTTTAGATTG 121
Query 113 TAACTTAGGGTTACTGATTGCTGTAATGCTCTGAGTTCCCCTCTAACGAGGATTTGTTGT 172
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 122 TAACTTAGGGTTACTGATTGTTGTAATGCTCTGAATTCCCCTCTAACGAGGATTTGTTGT 181
Query 173 CACTGCAATCGA-TTTTACGGATTAGGTTTAATTTAAGGCATTTTTTGCGTACCTCTTGT 231
|||||||||||| |||| | |||||||||||||||| |||||| ||||||||||||||||
Sbjct 182 CACTGCAATCGATTTTTGCCGATTAGGTTTAATTTAGGGCATTATTTGCGTACCTCTTGT 241
Query 232 GTTGTATAGTTCTTTGAAATGGAGAATTCGCGTAGACCGTTTGATAGATCCAGAGATCCA 291
||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 242 ATTGTATAGTTCTTTGGAATGGAGAATCCTCGTAGACCGTTTGATAGATCCAGAGATCCA 301
Query 292 GGTCCGATGAAGAAACCTAGGCTCAGCGAGGAATCAATCCGGCCTGTGAATTCCAACGCG 351
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 302 GGTCCGATGAAGAAACCCAGGCTCAGCGAGGAATCAATCCGGCCTGTTAATTCCAACGCG 361
Query 352 CGGCAGTTTTTGTCGCAGAGAACGCTTGGTACGGCTACGGCGGTGACAGTACCACCGGCG 411
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 362 CGGCAGTTTTTGTCGCAGAGAACGCTTGGTACGGCTACGGCGGTGACAGTGCCACCTGCT 421
Query 412 TCGTCAAGATTTCGAGTTGGTGGCAGAGAAATTGAGAGTAGTATTG-CAAGTGATCCGAG 470
|||||||| ||||||||| |||| ||||||| |||||||||||||| || ||||||||||
Sbjct 422 TCGTCAAGGTTTCGAGTTAGTGGTAGAGAAACTGAGAGTAGTATTGTCA-GTGATCCGAG 480
Query 471 CCGAGAGGCTTACCAGCCACAGCCGGTTCATCCACATTACGAGCTTGTGAATCAGTACAA 530
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 CCGAGAGGCTTACCAGCCACAGCCGGTTCATCCACATTATGAGCTTGTGAATCAGTACAA 540
Query 531 GTCTGCACTTGCTGAGCTCACTTTCAACTCGAAGCCAATAATAACGAACCTTACAATAAT 590
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 GTCTGCACTGGCTGAGCTCACTTTCAACTCGAAGCCGATAATAACGAACCTTACAATAAT 600
Query 591 TGCTGGAGAGAATGTTCATGCTGCTAAAGCCGTCGTAGCCACCATTTGCAACAACATCCT 650
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 601 TGCTGGAGAGAATGTTCATGCTGCTAAAGCCGTCGTAACCGCCATTTGCAACAACATCCT 660
Query 651 CGAGGTGAACACCCAGTTTTCATGCCCACTGTTATAGTTGTTGTTGTTA-TACTCC-GTG 708
||||||||||||||||||||||||||||||||| | |||||| | | | || ||
Sbjct 661 CGAGGTGAACACCCAGTTTTCATGCCCACTGTTTT-GTTGTTATAATCCGTGCTTTAGTT 719
Query 709 CTCTAGTT---GTTTGACTAAT--T----GTACGATATAAGGG-AATTAAGGTAAA-GGT 757
||| | || |||||| |||| | |||||||||||||| ||| |||||||| |||
Sbjct 720 CTCAAATTCTTGTTTGAGTAATAATAATTGTACGATATAAGGGGAAT-AAGGTAAAAGGT 778
Query 758 GGTGGTAGAGATTTGTGTTATCTGTATTACGAGGTTCAATGAGAAATT 805
|||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 GGTGGTTGAGATTTGTGTTATCTGTAT-ACGAGGTTCAATGAGAAATT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5