BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482630
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36500.1 | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1... 2695 0.0
> AT2G36500.1 | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1)
domains-containing protein | chr2:15318028-15320152 FORWARD
LENGTH=1845
Length=1845
Score = 2695 bits (1459), Expect = 0.0
Identities = 1674/1777 (94%), Gaps = 18/1777 (1%)
Strand=Plus/Plus
Query 25 AGAAAGATTCAAACTTTTCCAAATCCTTCAACGCCATTGAAATAGCATTTCACAGGTTAG 84
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 85 AGAAAGTTTCAAACTTTTCCAAAT-CTTCAACGCCATTGAAATAGCATCTCACAGATT-- 141
Query 85 GGTG-GTGATTAAAGA-CTTCAATATGACGACTACACCAACTTCATCTGGGAGGAGAAGC 142
| || || |||||||| | |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 142 GATGAGTCATTAAAGACCGTCAATATGACGACTACTCCAACTTCATCTGGGAGAAGAAGC 201
Query 143 ATTTCAAGTATAAGGAGAACATCATCAGCTTCTAAGAAACCTGTTCTTCAATCAGAAGAG 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 ATTTCAAGTATAAGGAGAACATCATCAGCTTCTAAGAAACCTGTTCTTCAATCAGAAGAG 261
Query 203 AGCGAAAGCGGAAGCGGAAGCCTGAGTGAGAACATCTCCAAACCCGATTCACCTCTTGCT 262
||||||||||||||||||||| | | ||||||| ||||||||| |||||||||||||||
Sbjct 262 AGCGAAAGCGGAAGCGGAAGCATTAACGAGAACACCTCCAAACCTGATTCACCTCTTGCT 321
Query 263 CAACCGGTTTCTGATGGCGAGAGAACTGTCAAGAAGCTACGGTTATCCAAAGCTCTCACT 322
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 322 CAACCGGTTTCTGATGGCGAGAGAACAGTCAAGAAGCTACGGTTATCCAAAGCTCTCACT 381
Query 323 ATTAATGAGGGAACCACCGTCTTTGATGCTTGTCGAAGGATGGCGGCTCGGCGTGTTGAT 382
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 382 ATTAATGAGGGAACCACTGTCTTTGATGCTTGTCGAAGGATGGCTGCTAGGCGTGTTGAT 441
Query 383 GCGGTTTTGTTGACTGATTCAAGCGCTCTTCTTTCCGGTATTGTTACAGACAAGGATATA 442
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 442 GCGGTTTTGTTAACTGATTCAAGCGCTCTTCTTTCCGGTATTGTTACAGACAAAGATATA 501
Query 443 GCCACAAGGGTGATTGCAGAAGGGTTGAGACCAGAGCACACTCTGGTGTCTAAAGTCATG 502
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 502 GCCACGAGGGTGATTGCAGAAGGGTTGAGACCAGAGCATACTCTGGTGTCTAAAGTCATG 561
Query 503 ACAAGGAATCCCATTTTTGTCACATCAGATTCACTCGCCATCGAGGCTCTTCAGAAGATG 562
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 562 ACAAGGAATCCCATTTTTGTCACATCTGATTCACTTGCCATTGAGGCTCTTCAGAAGATG 621
Query 563 GTTCAGGGAAAGTTCAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTCTCTTG 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 622 GTTCAGGGAAAGTTCAGGCACTTGCCTGTTGTAGAGAATGGTGAAGTCATTGCTTTGTTG 681
Query 623 GATATCACAAAGTGCCTCTATGATGCTATCTCTCGGATGGAAAAAGCCGCAGAGCAAGGA 682
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 682 GATATCACAAAGTGTCTCTATGATGCTATCTCACGGATGGAAAAAGCTGCAGAGCAAGGA 741
Query 683 AGTGCTTTAGCCACTGCAGTGGAAGAACGACATTGGGGAAGTGGAAATTTCGCTTTCATC 742
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 742 AGTGCTTTAGCTACTGCAGTGGAAGAACGGCATTGGGGAAGTGGAAACTTCGCTTTCATT 801
Query 743 GACACATTGAGGGAGCGGATGTTCAAGCCTGCGTTGTCAACGATAGTCAGTGAGAATACC 802
|| |||||||| ||| |||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 802 GATACATTGAGAGAGAGGATGTTCAAGCCTGCATTGTCAACTATAGTCACTGAGAATACC 861
Query 803 AAAGTTGCACTCGTATCAGCATCAGATCCTGTCTTTGTAGCTTCCAAAAGGATGCGGGAT 862
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 862 AAAGTTGCACTTGTATCAGCATCAGATCCTGTCTTTGTAGCTTCCAAAAAGATGCGTGAT 921
Query 863 TTGCGGGTTAATTCTGTGATCATCGCTGTTGGGAACAAGATTCACGGGATTCTAACTTCA 922
||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 922 TTGCGGGTTAACTCTGTGATCATCGCGGTTGGGAACAAGATTCATGGGATTTTAACTTCA 981
Query 923 AAGGACATTTTGATGAGAGTTGTGGCACAGAATCTATCTCCTGAGCTGACTCTTGTTGAA 982
||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 982 AAGGACATTCTCATGAGAGTTGTAGCACAGAATCTATCTCCTGAGCTGACTCTTGTTGAA 1041
Query 983 AAGGTAATGACACCAAATCCTGAATGTGCATCAATAGAGACAACAATCCTAGATGCATTG 1042
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1042 AAGGTAATGACGCCAAATCCTGAATGTGCATCAATAGAGACAACAATCCTCGATGCATTG 1101
Query 1043 CATATAATGCACGATGGGAAGTTTTTGCATCTTCCGGTTTTAGATAAAGACGGATTCGCC 1102
||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1102 CATATAATGCATGATGGGAAGTTCTTGCATCTGCCGGTTTTCGATAAAGACGGATTCGCC 1161
Query 1103 GTAGCTTGTTTAGACGTGCTGCAGATAACGCATGCCGCTATTTCAACGGTTGAGAACAAC 1162
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 1162 GTAGCTTGTTTAGACGTGCTGCAGATAACTCACGCAGCTATATCAACGGTTGAGAACAAC 1221
Query 1163 AGCTCAGGAGCTGTTAACGAGATGGCGAATACGATGATGCAAAAGTTCTGGGACTCAGCT 1222
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1222 AGCTCAGGAGCTGTTAACGATATGGCGAATACAATGATGCAAAAGTTCTGGGACTCAGCT 1281
Query 1223 CTTGCGTTAGATCCACCCGAGGATTACGAAACACACAGCGATATGTCAGCGATGCTGATA 1282
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1282 CTTGCGTTAGAACCACCTGAGGATTACGAAACACACAGCGATATGTCAGCAATGCTGATA 1341
Query 1283 AATTCAGAAGGGAAGCAGTCATGTCCATCACAAGGACTTGTGAGCTCGTTTGCTTTCAAA 1342
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AATTCAGAAGGGAAGCAGTCGTGTCCATCACAAGGACTTGTGAGCTCGTTTGCTTTCAAA 1401
Query 1343 TTCGAAGATCGTAAAGGGAGAGTACATCGGTTTAACTCGACGGGTGAGAGTCTTGAAGAG 1402
|||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||
Sbjct 1402 TTCGAAGATCGTAAAGGGAGAGTACAGCGGTTTAACTCAACTGGTGAGAGTTTTGAAGAG 1461
Query 1403 CTGATGAGTGTTGTGATGCAAAGATGCGAAGCGGATTCAGGCCTTCAGATAATGTACCAA 1462
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1462 CTGATGAGTGTTGTGATGCAAAGATGTGAAGCGGATTCAGGCCTTCAGATAATGTACCAA 1521
Query 1463 GATGATGAAGGTGATAAAGTTTTGATTAGTAGGGACAGTGATCTTGTTACTGCTGTAACT 1522
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1522 GATGATGAAGGTGATAAAGTTTTGATTAGTAGGGACAGTGATCTTGTTGCTGCTGTAACT 1581
Query 1523 TTTGCCAGGTCTTTGGGGCAAAAGGTTTTGCGACTGCACCTTGATTTCACCGAGACAATG 1582
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1582 TTTGCTAGGTCTTTGGGGCAAAAGGTTTTGCGACTACATCTTGATTTTACCGAGACAATT 1641
Query 1583 GCTCCTCTTGAGACGATTTCAGATTTGTCCGAGGGAAATGGCGGTTGTGTTTGGTGGCGG 1642
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1642 GCTCCTCTTGAGACGATTGCAGATTTGTCCGAGGGAAATGGCGGTTGTGTTTGGTGGCAG 1701
Query 1643 ACTGGCGTCATGGCTGGGGCTATCGTCCTAACGAGCATAGGTTTACTTGTTTACTTGAAA 1702
||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 1702 ACTGGCGTCTTGGCTGGTGCTATTGTCCTAACGAGCATAGGTTTATTTGTTTACTTAAAA 1761
Query 1703 CGTTCCAAGAAATGATATGTTGAATGGGAACTTAATTGTATTACAAACTTACACTGTTAC 1762
||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1762 CGTTCCAAGAAATGATATGTTGAATGGGAACTTAATTGTATTACA--CT------GTTAC 1813
Query 1763 TTTGTCttttttttttttACGATTCACATTGCAAAGC 1799
||||||||||| || ||||||||||||||||||
Sbjct 1814 TTTGTCTTTTTATT-----CGATTCACATTGCAAAGC 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89005566285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5