BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482632
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36540.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 536 1e-151
AT2G36550.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NLI inter... 455 3e-127
> AT2G36540.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr2:15325237-15326449 FORWARD
LENGTH=750
Length=750
Score = 536 bits (290), Expect = 1e-151
Identities = 350/379 (92%), Gaps = 3/379 (1%)
Strand=Plus/Plus
Query 340 GACCAAGAAGAGTGTACGGACAGTGGATTTAAAACACTAGAGAACCGTTACAAGCCTTTG 399
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 374 GACCAAG-AGAGTGTACGGACAGTGGATATAAAACACTAGAGAACCGTTACAAGCCTTTG 432
Query 400 TTCTTCAAGGATCTCTCCAAAGTGTTTC-AGTGCTTCAAAGGCTTCTCTGCTTCAAATTC 458
||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||| |
Sbjct 433 TTCTTTAAGGATCTCTCTAAAGTG-TTCAAGTGCTTTAAAGGCTTCTCTGCTTCAAACAC 491
Query 459 CATCTTCATTGATGATGAACCCTATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 518
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 492 CATCTTCATTGATGATGAACCATATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTT 551
Query 519 TCCAATGAGCTATGACCCTTCTAACAAAAATGATAGTTTACTTGATCCAGAAGGAGAGTT 578
|||||||||||||| ||||||||| ||| |||| |||||||||||| |||||||||||
Sbjct 552 CCCAATGAGCTATGATGCTTCTAACATAAAGGATAATTTACTTGATCCGGAAGGAGAGTT 611
Query 579 CTGTTCTTACTTGGACGGTTTAGCAAAATCATCGGATGTTCAGGCTTACATAAAAGAGCA 638
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 612 GTGTTCTTACTTGGAAGGTTTGGCAAAATCATCGGATGTTCAGGCTTACATAAAAGTGCA 671
Query 639 CTCTTTTGGACAGCCCAAGATCGATTCTTCTCATCCCGATTGGTCTTTCTACCGCAAAGT 698
|||||||||| ||||| |||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 672 TTCTTTTGGACGGCCCATGATCGATTCTTCTCATCCTGATTGGTCTTTCTACAGCAACGT 731
Query 699 GTCGAAGATTGTCTCTTAA 717
|| |||||||||||||||
Sbjct 732 TTCAAAGATTGTCTCTTAA 750
Score = 459 bits (248), Expect = 2e-128
Identities = 314/345 (91%), Gaps = 7/345 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGAAAA-ACTCAAGAAGAGTATCATTTG-TTCCGACGACAGCGACGATGAGT 58
|||||||||||||| | |||||||||| | ||| | | |||||||||||||||||||
Sbjct 1 ATGGCTGAAGAAAAGA-TCAAGAAGAG-CTTGCTTGCTGCGGACGACAGCGACGATGAGT 58
Query 59 ACTC---AGGTGACACTGTTTCAGAGCAGACAGAACTGAGTTCGATCCTGGGTAAACTTA 115
|||| |||||| || |||||||| |||||||||||||||||||| || | ||||||||
Sbjct 59 ACTCAAGAGGTGATACAGTTTCAGATCAGACAGAACTGAGTTCGATTCTTGATAAACTTA 118
Query 116 GTATAGAACCCGAGAAGGAGAAGAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCTTC 175
|| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 GTCTAGAACCTAAGACGGAGAAAAAGAAACTCTTGGTCTTGAGTCTAAGTGGTCTTCTTC 178
Query 176 TTCACAGAGTCCACATAAAAGAGATGCGTAAGAAACCCAAGAACCGCTCTCCTGATGCTT 235
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCACAGAGTCCACAAAAAAGAGTTGCGTAAGAAACCCAAGAACCGCTCTCCTGATGCTT 238
Query 236 CTTGTGGCCCAAATCTTGTGTATAAGAGGCCATTTGCTGAAGAGTTTATGAAGTTTTGTC 295
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 239 CTTGTGGGCCAAATCTTGTGTATAAGAGACCGTTTGCTGAAGAGTTTATGAAGTTTTGTC 298
Query 296 TTGAGAGATTCGAAGTTGGGATTTGGTCCTCTGCTTGCGAGTTAG 340
|||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 299 TTGAGAGATTTGAAGTTGGTATTTGGTCCTCTGCTTGCGAGTTAG 343
> AT2G36550.1 | Symbols: | CONTAINS InterPro DOMAIN/s: NLI interacting
factor (InterPro:IPR004274); BEST Arabidopsis thaliana
protein match is: Haloacid dehalogenase-like hydrolase (HAD)
superfamily protein (TAIR:AT2G36540.1); Has 91 Blast hits
to 91 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 87; Viruses - 2; Other Eukaryotes
- 2 (source: NCBI BLink). | chr2:15327479-15328802 FORWARD
LENGTH=720
Length=720
Score = 455 bits (246), Expect = 3e-127
Identities = 335/378 (89%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 343 CAAGAAGAGTGTACGGACAGTGGATTTAAAACACTAGAGAACCGTTACAAGCCTTTGTTC 402
|||||| |||||||||||||||||| |||||| || |||||| || |||||||| |||||
Sbjct 346 CAAGAAAAGTGTACGGACAGTGGATATAAAACGCTTGAGAACAGTGACAAGCCTCTGTTC 405
Query 403 TTCAAGGATCTCTCCAAAGTGTTTCAGTGCTTCAAAGGCTTCTCTGCTTCAAATTCCATC 462
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 406 TTTAAGGATCTCTCTAAAGTGTTTCAGTGCTTCAAAGGTTTCTCTGCTTCAAACACCATA 465
Query 463 TTCATTGATGATGAACCCTATAAAGCTCTTCGTAATCCTGACAATACTGGTCTGTTTCCA 522
|||||||| || ||||| || |||||||||| ||||||||||||||| ||| |||| ||
Sbjct 466 TTCATTGAAGAAGAACCTTACAAAGCTCTTCTTAATCCTGACAATACAGGTGTGTTCCCG 525
Query 523 ATGAGCTATGACCCTTCTA-ACA-AAAATGATAGTTTACTTGATCCAGAAGGAGAGTTCT 580
|||| |||||||| || | ||| |||| |||| ||||||||||||||||||||||||||
Sbjct 526 TTGAGTTATGACCCGTC-AGACACAAAA-GATAATTTACTTGATCCAGAAGGAGAGTTCT 583
Query 581 GTTCTTACTTGGACGGTTTAGCAAAATCATCGGATGTTCAGGCTTACATAAAAGAGCACT 640
||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 584 GTTCTTACTTGGATGGTTTGGCAAATTCATCTGATGTTCAGGCTTACATAAAGGAGCA-T 642
Query 641 C-TTTTGGACAGCCCAAGATCGATTCTTCTCATCCCGATTGGTCTTTCTACCGCAAAGTG 699
| |||||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 643 CCTTTTGGACAGCCCATGATCGATTCTTCTCATCTTGATTGGTCTTACTACCGCAGAGTG 702
Query 700 TCGAAGATTGTCTCTTAA 717
||||| ||||||||||||
Sbjct 703 TCGAATATTGTCTCTTAA 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5