BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482633
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36560.1 | Symbols: | AT hook motif DNA-binding family prot... 1177 0.0
> AT2G36560.1 | Symbols: | AT hook motif DNA-binding family protein
| chr2:15329143-15332447 REVERSE LENGTH=1775
Length=1775
Score = 1177 bits (637), Expect = 0.0
Identities = 930/1066 (87%), Gaps = 42/1066 (4%)
Strand=Plus/Plus
Query 5 CGAACTCAACGCCCATCTCTCCCTTTCCGGTCACGGAGACTGCCGCATCGGCACCAGCCA 64
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 92 CGAACTCAACGCCCATCTCTCCCTTTCCGGTCACCAAGACTGCCGAAGCGGCACCAGCCA 151
Query 65 CGGTGGTGGAGGGTGTCAACGACGCGAGTAGGAAGAGAGAAAGGCCGAAGACGTACGATC 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 152 CGGTGGTGGAGGGTGTCAACGACGCGAGCAGGAAGAGAGAAAGGCCGAAGACGTA---TC 208
Query 125 GTGATTATAAAGGGAGGTTTACCACAAAATCTGGGACATTTACGCCGAGGTCGTCGTTGA 184
||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 209 GTGATTATAAAGGGAGGTTTATCACAGCATCTGGGACATTTACGCCGAGGTCATCGTTGA 268
Query 185 GGAACAGAAGAGGTGACATGTCTATGGGGTTTGGAGGAGGGGACTTCAAGCCGCATATG- 243
|||| || |||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 269 GGAAGAGGAGAGGTGACATGTCTATGAGGCTTGGAGGAGGGGACTTCACGCCGCATA-GC 327
Query 244 TTCACAGTTAACAAAGGAGAGGATATTATCAAGAGGATCATGTCCTTCACTGAAAATGGT 303
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 328 TTCACAGTTAATAAAGGAGAGGATATAATCAAGAGGATCATGTCCTTCACTGCAAATGGT 387
Query 304 TCTCGTGGGATCAGTGTTTTGTCAGCAAATGGTGCGGTTGCTAACGTCAAGATTCAACTT 363
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| || |
Sbjct 388 TCTCGTGGGATCAGTGTTTTGTCAGTAAATGGTGCGGTTGCTAACGTTACGATTCTACCT 447
Query 364 CACAGTTCAAGCCGCAGGGTCGTGACGTATAAGGATGAGTATGAGATAGTATCGCTGAGC 423
||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |
Sbjct 448 CACGGTTCAAGCCGCAGGGTCATGACGTTTAAGGAGGAGTATGAGATAGTATCGCTGACC 507
Query 424 AATA---CAATGGCGATATCTGAGAGCGGAGGAGTGAAACATAAGACGGGAGGGTGGCGG 480
|||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 508 AATAATACAATGGCGATATCTGAGAGCGGAGGAGTGAAAAATAAGACCGGAGGGTGGCGG 567
Query 481 ATTATGATTGGTGGAGCTCCTGGTGCAAGTGTCTTTGGTGGTACTTTGGCTGGGAGTCTC 540
|||| ||||||||||||| |||||| | ||||| ||||||| |||||||||||||||||
Sbjct 568 ATTACGATTGGTGGAGCTGCTGGTGGACGTGTCCATGGTGGTGCTTTGGCTGGGAGTCTC 627
Query 541 ATTGCAGCAAGTCCTGTCCAAGTTGTGATTGGAAGTTTCTGGCCGTTGGTCTCAAAACCG 600
|||||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 628 ATTGCAGCAAGTCCAGTCCAAGTTGTGATTGGAAGTTTCTGGCCGTTGATCACAAATTCG 687
Query 601 CCTCAGACA-AGGAAATATGTGTTG---GCT-TC-TT-C-C-A-C-AT--CACCAAACTT 647
| ||||| | ||||| ||||||| ||| | || | | | | || ||||||||||
Sbjct 688 CGTCAGA-AGAGGAAGTATGTGTCCAAAGCTATGGTTGCTCCATCCATAACACCAAACTT 746
Query 648 GGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGATTCGCCCTTCTCGCTC 707
||||||||||||||||||| || |||||||||||||| ||| || ||||||||| |||
Sbjct 747 GGTGGCTTCCTCATCCACAAGACCGGTCCAACAACCAGAGATGGTTGGCCCTTCTCACTC 806
Query 708 TCAGAAGAGGAAC-GATGAGTCCAACAGAGCTATGGTTGTTTTTTCA-CCTACAACACCA 765
||||||||||||| | |||||||||||| ||||||||||| ||||| || ||| |||||
Sbjct 807 TCAGAAGAGGAACAGC-GAGTCCAACAGAACTATGGTTGTTCTTTCAGCC-ACACCACCA 864
Query 766 AACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAGATATGATTGGCCCTTC 824
||| |||||||| ||||||| | |||| | |||| ||||||| ||| ||||||||||
Sbjct 865 AACACATTGGCTTCCTCATCCACA-GGACCGGTCCAACAACCAGAGATGGTTGGCCCTTC 923
Query 825 TCACTCTCAGGAGAGGAAC-GATGAGTCCAACAAAGCTATGGTTGTTTTTTCACCCACAA 883
|||||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||
Sbjct 924 TCACTCTCAGAAGAGGAACAG-TGAGTCCAACAAAACTATGGTTGTTCTTTCAGCCACAC 982
Query 884 CACCAAACTTGTTGGCTTCCTCCTCCACAGAACAAGACCAACAACCAGATATGATTGGCC 943
|||||||| ||||||||||| ||||||| || | |||||||||||| ||| ||||||
Sbjct 983 CACCAAACACATTGGCTTCCTCATCCACAGGACCGGTCCAACAACCAGAGATGGTTGGCC 1042
Query 944 CTTTTCACTCTCAGAACAGGAAC-GATGAGTCCAAC-GA--T--G-T-GATTCTTCTACC 995
||| |||||||||||| |||||| | |||||||||| || | | | | || ||| | |
Sbjct 1043 CTTCTCACTCTCAGAAGAGGAACAG-TGAGTCCAACAGAACTACGGTTGTTTTTTC-AGC 1100
Query 996 CACAGTAC-AATACTTATTGGCTTCCTCATTCACAGGACAACTCCA 1040
|||| || || || |||||||||||||| |||||||||| ||||
Sbjct 1101 CACACCACCAA-ACACATTGGCTTCCTCATCCACAGGACAAGTCCA 1145
Score = 527 bits (285), Expect = 1e-148
Identities = 383/430 (89%), Gaps = 8/430 (2%)
Strand=Plus/Plus
Query 632 CCACATCACCAAACTTGGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGA 691
||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 977 CCACACCACCAAACACATTGGCTTCCTCATCCACAGGACCGGTCCAACAACCAGAGATGG 1036
Query 692 TTCGCCCTTCTCGCTCTCAGAAGAGGAACGA-TGAGTCCAACAGAGCTATGGTTGTTTTT 750
|| ||||||||| |||||||||||||||| | ||||||||||||| ||| ||||||||||
Sbjct 1037 TTGGCCCTTCTCACTCTCAGAAGAGGAAC-AGTGAGTCCAACAGAACTACGGTTGTTTTT 1095
Query 751 TCA-CCTACAACACCAAACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAG 808
||| || ||| |||||||| |||||||| ||||||| | ||||||| ||| | |||||
Sbjct 1096 TCAGCC-ACACCACCAAACACATTGGCTTCCTCATCCACA-GGACAAGTCCAGGGACCAG 1153
Query 809 ATATGATTGGCCCTTCTCACTCTCAGGAGAGGAACGATGAGTCCAACAAAGCTATGGTTG 868
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct 1154 ATATGATTGGCCCTTCTCACTCTCAGGAGAAAAAAGATGAGTCCAACAACGCTATGGCTG 1213
Query 869 TTTTTTCACCCACAACACCAAACTTGTTGGCTTCCTCCTCCACAGAACAAGACCAACAAC 928
|||||||||||||| |||||| ||| ||||||||||| ||||||||||||| ||||||||
Sbjct 1214 TTTTTTCACCCACAGCACCAAGCTTCTTGGCTTCCTCATCCACAGAACAAGTCCAACAAC 1273
Query 929 CAGATATGATTGGCCCTTTTCACTCTCAGAACAGGAACGATGAGTCCAACGATGTGATTC 988
|||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||
Sbjct 1274 CAGATATGATTGGCCCTTATCACTCTCGGCAGAGGAACGATGAGTCCAACGATGTGATTC 1333
Query 989 TTCTACCCACAGTACAATACTTATTGGCTTCCTCATTCAC-AGGACAACTCCAACGTCAA 1047
||||||||||||| ||||||||| |||||||||||||||| || |||| |||||||||||
Sbjct 1334 TTCTACCCACAGTTCAATACTTACTGGCTTCCTCATTCACTAG-ACAAGTCCAACGTCAA 1392
Query 1048 CCAGAGATGA 1057
||||||||||
Sbjct 1393 CCAGAGATGA 1402
Score = 521 bits (282), Expect = 5e-147
Identities = 567/693 (82%), Gaps = 65/693 (9%)
Strand=Plus/Plus
Query 632 CCACATCACCAAACTTGGTGGCTTCCTCATCCACAGGAAAAGTCCAACAACCAGATATGA 691
||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1100 CCACACCACCAAACACATTGGCTTCCTCATCCACAGGACAAGTCCAGGGACCAGATATGA 1159
Query 692 TTCGCCCTTCTCGCTCTCAGAAGAGGAACGATGAGTCCAACAGA-GCTATGGTTGTTTTT 750
|| ||||||||| ||||||| ||| || ||||||||||||| | ||||||| |||||||
Sbjct 1160 TTGGCCCTTCTCACTCTCAGGAGAAAAAAGATGAGTCCAACA-ACGCTATGGCTGTTTTT 1218
Query 751 TCACCTACAACACCAAACTTGTTGGCTTCATCATCCA-ATGGACAAGCCCAAGAACCAGA 809
||||| ||| |||||| ||| |||||||| ||||||| | | ||||| |||| |||||||
Sbjct 1219 TCACCCACAGCACCAAGCTTCTTGGCTTCCTCATCCACA-GAACAAGTCCAACAACCAGA 1277
Query 810 TATGATTGGCCCTTCTCACTCTCAGG-AGAGGAACGATGAGTCCAACAAAGCTATGGTTG 868
|||||||||||||| |||||||| || |||||||||||||||||||| | || | ||
Sbjct 1278 TATGATTGGCCCTTATCACTCTC-GGCAGAGGAACGATGAGTCCAAC---G--AT-G-TG 1329
Query 869 TTTTTTC-ACCCACAACACCAA-ACTTGTTGGCTTCCTCCTCCAC-AGAACAAGACCAA- 924
|| ||| |||||| | ||| |||| |||||||||| | ||| || ||||| ||||
Sbjct 1330 ATTCTTCTACCCAC-AGTTCAATACTTACTGGCTTCCTCATTCACTAG-ACAAGTCCAAC 1387
Query 925 --CAACCAGATATGATTGGCCCTTTTCACTCTCAGAACAGGAACGATGAGTC-CAACGAT 981
|||||||| |||| ||||||| ||| |||||||| ||||| |||||||| ||| | |
Sbjct 1388 GTCAACCAGAGATGACAGGCCCTTCTCATTCTCAGAAGAGGAATGATGAGTCGCAA-GCT 1446
Query 982 GTGATTCTTCTAC-CCA-CAGTA-CAATACTTATTGGCTTCCTCATTCACAGGACAACTC 1038
| | || | ||| ||| || || ||| ||| |||||||||||||||||| |||||| ||
Sbjct 1447 GCGGTT-GT-TACACCAGCAATACCAA-ACTCATTGGCTTCCTCATTCACTGGACAAGTC 1503
Query 1039 CAACGTCAA-C---CA-G--A-G--------A---T--GATGAGGAACGATGAGCCCCAA 1077
||||||||| | | | | | | | || ||||||| ||||| |||||
Sbjct 1504 CAACGTCAAGCAGAAATGACAGGCCCTTCTCATTCTCAGAAGAGGAACAATGAGTCCCAA 1563
Query 1078 GCTGTGGTTGTTCCACCTGGAATACCAAACTTATTGGCTTCCTCATTCACTGGACCAGAG 1137
|||| ||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1564 GCTGCGGTTGTTACACCTGAAATACCTAACTTATTGGCTTCCTCATTCACCGGACCAGAG 1623
Query 1138 ATGATAGAACCTTCTCATTCTGA-GA-ACT--ACGATGAGTCTT-ACCCTTCTCAGTTTC 1192
||||||| ||||||||||||||| || | | ||||||||| || |||||||||||||||
Sbjct 1624 ATGATAGGACCTTCTCATTCTGAGGAGA-TGAACGATGAGT-TTAACCCTTCTCAGTTTC 1681
Query 1193 TGACTCTAGGGTGGTACAACTCTACACCGGAGCAAGACAAGTAATCTCATCAGAAACTTT 1252
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1682 TGACTCTAGGGTGGTACAGCTCTACACCGGAGCAAGACAAGTAATCTCATCA-AAA---- 1736
Query 1253 TTAACATTGGACT-CTTAAGTTCATAAAAGTTT 1284
||||||||||| |||||||||||||||||||
Sbjct 1737 --AACATTGGACTTCTTAAGTTCATAAAAGTTT 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5