BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482636
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 |... 2254 0.0
AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 |... 1668 0.0
AT1G42090.1 | Symbols: | pseudogene, similar to betaine/prolin... 268 9e-71
AT1G41890.1 | Symbols: | pseudogene, proline transporter 2, si... 91.6 2e-17
> AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3
| chr2:15343006-15345337 REVERSE LENGTH=1597
Length=1597
Score = 2254 bits (1220), Expect = 0.0
Identities = 1395/1479 (94%), Gaps = 13/1479 (1%)
Strand=Plus/Plus
Query 1 TTCAACAACTTCTCATTTCTAAAACCTTTTAAAAATCTCTCTACCACTTCTAATTGGACT 60
||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 15 TTCAACAACTTCTGATTTCTAAAATCTTTTAAAAATCTCTCCGCCACTTCTAGTTGGACT 74
Query 61 TGATTTCCCACCCACCATAGACTCTTCTTTTCCATTGTTAGCGACCATCTATTATAAAGG 120
|||||| | |||||||| ||| | || |||||| ||||||||||||||| |||
Sbjct 75 TGATTT----CTCACCATAG-----TCTGTCCCGTTGTTACCGACCATCTATTATATAGG 125
Query 121 GAAAGGCTCTTAGCTGCAGAGACACAATAACCATTTGGTGA--TCATGAGCGCTAAGAAT 178
||||| ||||||||| |||||||||||||||||||||| || |||||| | ||||||||
Sbjct 126 GAAAGTCTCTTAGCTACAGAGACACAATAACCATTTGGAGAGGTCATGAACTCTAAGAAT 185
Query 179 CGCATAAACAATGTCGGAGAAGATGTTGATATCGAAATCCCTGACACTGCTCATCAGATA 238
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 186 CGCATAAACAATGTCGGGGAAGGTGTTGATATCGAAATCCCTGACACTGCTCATCAGATT 245
Query 239 AGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATAC 298
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 246 AGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACAAGTATAAACAGCGCATAC 305
Query 299 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGT 358
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 306 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGT 365
Query 359 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 425
Query 419 TTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTCATTTACGGTAGAAAG 478
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 426 TTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAG 485
Query 479 GCTTATTGTCTTACATGGGTGCTGCAATATGTCAATCTTTTCATGATAAACTGTGGATTC 538
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 486 GCTTATTGTCTTACATGGGTGTTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTC 545
Query 539 ATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGGTTTTTAGGGATGATCATGCC 598
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 546 ATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCATGCC 605
Query 599 ATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTTGTGCGGTTTTTGCGATTGGG 658
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 606 ATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTGTGCGGTTTTTGCTATTGGA 665
Query 659 ATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCGGTTTCGA-TCATCCTCAGCCTCAT 717
|| |||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 666 ATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTCGACT-ATCCTCAGCCTCAT 724
Query 718 CTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 777
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 725 CTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 784
Query 778 TTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCAAC 837
||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 785 TTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTAC 844
Query 838 ACTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAATTCAGGCAACAGTAAGGCAACC 897
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 845 ACTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATTCAGGCAACAGTAAAGCAACC 904
Query 898 GGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 957
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 964
Query 958 GTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGGCTTATCTACT 1017
|| ||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct 965 GTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACT 1024
Query 1018 AAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1077
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1025 AAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1084
Query 1078 ATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATATGAGTATATGGACACAAAGTT 1137
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1085 ATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTT 1144
Query 1138 TGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1197
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1145 TGGGATCAAAGGAAACCCATTGGCATTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1204
Query 1198 CGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTTACCATTCCTTGGGGACTTCAT 1257
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1205 CGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCAT 1264
Query 1258 GAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGTA 1317
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1265 GAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATTCATTCTAGCCAACCACATGTA 1324
Query 1318 CTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAAGCTATGGCATTGGCTCAACGT 1377
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1325 CTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAAGCTATGCCATTGGCTCAACGT 1384
Query 1378 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1444
Query 1438 TGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476
||||||||| |||||||||||||||||||||||||||||
Sbjct 1445 TGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT 1483
> AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1
| chr2:16655679-16658331 FORWARD LENGTH=1801
Length=1801
Score = 1668 bits (903), Expect = 0.0
Identities = 1184/1320 (90%), Gaps = 17/1320 (1%)
Strand=Plus/Plus
Query 170 GCTAAGAATCGCATAAA-CAATGTC-G-GA--GA-A-GA---TGTTGATATCGAAATCCC 219
||||||||||||| ||| ||||||| | || || | || ||||||||||||||||||
Sbjct 359 GCTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCC 417
Query 220 TGACACTGCTCATCAGATAAGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAAC 279
||||||||||||||| || ||| |||||||||||||||||| ||||||||| |||| ||
Sbjct 418 TGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCAC 477
Query 280 CAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATG 339
| ||||||||||||| || ||||||||||||||||||||| | |||||||||||||| ||
Sbjct 478 CGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTG 537
Query 340 GACTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCT 399
|| ||||||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct 538 GATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCT 597
Query 400 CGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGG 459
|||| |||||||||||||||||||||| ||| |||||||||||||||||||| || ||
Sbjct 598 AATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGG 657
Query 460 GTTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-CTGCAATATGTCAATCTTT 518
|||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||
Sbjct 658 ATTCATTTACGGTAGGAAGGCTTATCATCTTACATGGG-GATTGCAATATGTTAATCTTT 716
Query 519 TCATGATAAACTGTGGATTCATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGG 578
||||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 717 TCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGC 776
Query 579 TTTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTT 638
|||| |||||||||||| ||||||| |||||||||||||||||||| | ||| ||||||
Sbjct 777 TTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTT 836
Query 639 GTGCGGTTTTTGCGATTGGGATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCG-GTT 697
||||| |||| || |||||||| ||||||||||| ||||||||| ||||||||| | |||
Sbjct 837 GTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTG-GAGTT 895
Query 698 TCGATCATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGA 757
|||| | ||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct 896 TCGACCTTCCTCAGTCTCATCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGA 955
Query 758 GTTAAAGCACCTTCAAGAGATTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACC 817
|| ||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 956 GTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACC 1015
Query 818 ATCACTGGAGCAGCCGCAACA-CTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAAT 876
||||| ||||||||||||| | || ||||||| ||||||||| || ||||||||||||||
Sbjct 1016 ATCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAAT 1074
Query 877 TCAGGCAACAGTAAGGCAACCGGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATT 936
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1075 TCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATT 1134
Query 937 CACGGTGGGTGTTTTACCGATGTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATC 996
||| | ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 1135 CACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATC 1194
Query 997 CTCAACCTCGGCTTATCTACTAAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGC 1056
|||||||||| | ||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1195 CTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGC 1254
Query 1057 TAACATCTCCGCTATCCTTCAATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATA 1116
|||| |||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1255 TAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATA 1314
Query 1117 TGAGTATATGGACACAAAGTTTGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTT 1176
|||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| || |
Sbjct 1315 TGAGTACATGGACACAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCT 1374
Query 1177 GTTTAGGATCATGGCAAGAGGCGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTT 1236
||||||||||||||| |||||||||||||||||||| || |||||| | ||||| || ||
Sbjct 1375 GTTTAGGATCATGGCGAGAGGCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTT 1434
Query 1237 ACCATTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATT 1296
|| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1435 GCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT 1494
Query 1297 CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAA 1356
|||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct 1495 CATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAA 1554
Query 1357 GCTATGGCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC 1416
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1555 GCTATGGCATTGGCTTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGC 1614
Query 1417 AGCTCTTAGGCTCATCGCCCTTGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476
|||| | || ||||||||| |||| ||||| || ||||| ||||||||||||||||||||
Sbjct 1615 AGCTGTCAGACTCATCGCCGTTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATT 1674
> AT1G42090.1 | Symbols: | pseudogene, similar to betaine/proline
transporter, similar to proline transporter 1 GI:1769901
from (Arabidopsis thaliana); blastp match of 62% identity and
2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline
transporter {Avicennia marina} | chr1:15720083-15720696
REVERSE LENGTH=614
Length=614
Score = 268 bits (145), Expect = 9e-71
Identities = 202/230 (88%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 245 GATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATACGTGTTG 304
|||||||||||||||| ||| || ||||| |||||||||||||| || || || ||||||
Sbjct 96 GATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCAGTATAAAAAGTGCCTATGTGTTG 155
Query 305 GGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGTCTTATT 364
|||||||| || ||||||||||||||||| || |||| |||||||||||||||||| |||
Sbjct 156 GGATATTCTGGGACAGTCATGGTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATT 215
Query 365 CTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAGTTTGGT 424
||||||||||||||||| || || ||||||||||| | |||||||||||||||||||||
Sbjct 216 CTTGCTACTGCAATCTCCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGT 275
Query 425 GGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGG-TTCATTTACGGTA 473
|||||||| |||||||| |||||||| |||| | || ||||| || ||||
Sbjct 276 GGCAAAAGACACATTCGTTATAGAGATCTCG-GAGGCTTCATCTATGGTA 324
> AT1G41890.1 | Symbols: | pseudogene, proline transporter 2,
similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match
of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783
amino acid permease {Oryza sativa} | chr1:15652635-15656463
REVERSE LENGTH=3829
Length=3829
Score = 91.6 bits (49), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 404 GCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTC 463
||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||
Sbjct 2100 GCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTCGCAGGCTTC 2159
Query 464 ATTTACGGTA 473
|| || ||||
Sbjct 2160 ATCTATGGTA 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5